Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0794 ATGGCGGAGTCCAATTTCCAAAACGGGACGAGCAGCGTTGGCGACGGTGATGTTAACGGCGAGGAAGAGCCGATTGACTACTTTCAGATGCTGTTTGATGATGACTCTGTGGGAATGAGCGGGTCGGCCTCGATGGCGGACCAAGTTCAGGATCCTTTGACTGGAAACCTTGGTGGTGGTGCTGATGACCTTACGTTGTCTTACCATGGGGATACTTACGTTTTTTACTCTGTGTTGCCGGACAAGGTGGAAGCCGCGATTTTGATGTTAAGTGAATATGAAGTTCCTTCTGGTATTCCTGGTGTTGGAAGTGATCCCGTGAACCAACAGGGCACCGATGGCTTTCCTGTCAAGTCAGATCCACAACAAAGTGCTGCTTCGTTGAGTAGGTATAGAGAGAAGAAAAAAGAAAGGTGTTTCGATAAGAAAGTTCGTTACGATGTGCGGAAAGAACTTGCTCTCAGAATGGAGCGGAAGAAGGGCCAGTTTGTATCGTCTAAAGGTATTGCAGATGAAGATGAGGGCTCATCTTCAGTTTTGGCTCAAAGTTCGGATTCCAATCAAGATGATGCCTTGTTAGAAACTTCTTCAAAATCTACCCCTATGATGCGTCGTGGACCAGCTGGCCCAATGACACTATGCAATGCATGTGGACTGCAGTGGTCTACTAAGGGAACTATGAGGGATCTTTCCAAGGTTTCAATCGCAGACATTCGGAAACCCTCTGCAAAGGAGACTGAACAGATAATGAATCAGATGCTGCAAATTAATGTGGGTGGTAAATCAGATGCTGTAAATAGGTCATAA 807 46.34 MAESNFQNGTSSVGDGDVNGEEEPIDYFQMLFDDDSVGMSGSASMADQVQDPLTGNLGGGADDLTLSYHGDTYVFYSVLPDKVEAAILMLSEYEVPSGIPGVGSDPVNQQGTDGFPVKSDPQQSAASLSRYREKKKERCFDKKVRYDVRKELALRMERKKGQFVSSKGIADEDEGSSSVLAQSSDSNQDDALLETSSKSTPMMRRGPAGPMTLCNACGLQWSTKGTMRDLSKVSIADIRKPSAKETEQIMNQMLQINVGGKSDAVNRS 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8489678 8493421 + Sed0017018.1 Sed06g0794 717337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0794 268 MobiDBLite consensus disorder prediction 163 206 - -
Sed06g0794 268 CDD ZnF_GATA 196 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0794 268 MobiDBLite consensus disorder prediction 176 202 - -
Sed06g0794 268 MobiDBLite consensus disorder prediction 103 128 - -
Sed06g0794 268 ProSiteProfiles Tify domain profile. 57 92 IPR010399 -
Sed06g0794 268 Gene3D - 194 249 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed06g0794 268 ProSiteProfiles CCT domain profile. 124 166 IPR010402 GO:0005515(InterPro)
Sed06g0794 268 MobiDBLite consensus disorder prediction 1 15 - -
Sed06g0794 268 MobiDBLite consensus disorder prediction 1 20 - -
Sed06g0794 268 SMART GATA_3 196 238 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0794 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 234 - -
Sed06g0794 268 PANTHER GATA TRANSCRIPTION FACTOR 28 34 247 IPR045280 GO:0006355(InterPro)
Sed06g0794 268 Pfam GATA zinc finger 198 227 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0794 268 Pfam CCT motif 126 166 IPR010402 GO:0005515(InterPro)
Sed06g0794 268 MobiDBLite consensus disorder prediction 100 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0794 Sed-Chr6:8489678 Sed10g1896 Sed-Chr10:35776240 7.20E-74 dispersed
Sed06g0793 Sed-Chr6:8471988 Sed06g0794 Sed-Chr6:8489678 1.30E-17 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38842 PF06203 CCT 5.00E-16 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0794 - - - 0.0