Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0794 ATGGCGGAGTCCAATTTCCAAAACGGGACGAGCAGCGTTGGCGACGGTGATGTTAACGGCGAGGAAGAGCCGATTGACTACTTTCAGATGCTGTTTGATGATGACTCTGTGGGAATGAGCGGGTCGGCCTCGATGGCGGACCAAGTTCAGGATCCTTTGACTGGAAACCTTGGTGGTGGTGCTGATGACCTTACGTTGTCTTACCATGGGGATACTTACGTTTTTTACTCTGTGTTGCCGGACAAGGTGGAAGCCGCGATTTTGATGTTAAGTGAATATGAAGTTCCTTCTGGTATTCCTGGTGTTGGAAGTGATCCCGTGAACCAACAGGGCACCGATGGCTTTCCTGTCAAGTCAGATCCACAACAAAGTGCTGCTTCGTTGAGTAGGTATAGAGAGAAGAAAAAAGAAAGGTGTTTCGATAAGAAAGTTCGTTACGATGTGCGGAAAGAACTTGCTCTCAGAATGGAGCGGAAGAAGGGCCAGTTTGTATCGTCTAAAGGTATTGCAGATGAAGATGAGGGCTCATCTTCAGTTTTGGCTCAAAGTTCGGATTCCAATCAAGATGATGCCTTGTTAGAAACTTCTTCAAAATCTACCCCTATGATGCGTCGTGGACCAGCTGGCCCAATGACACTATGCAATGCATGTGGACTGCAGTGGTCTACTAAGGGAACTATGAGGGATCTTTCCAAGGTTTCAATCGCAGACATTCGGAAACCCTCTGCAAAGGAGACTGAACAGATAATGAATCAGATGCTGCAAATTAATGTGGGTGGTAAATCAGATGCTGTAAATAGGTCATAA 807 46.34 MAESNFQNGTSSVGDGDVNGEEEPIDYFQMLFDDDSVGMSGSASMADQVQDPLTGNLGGGADDLTLSYHGDTYVFYSVLPDKVEAAILMLSEYEVPSGIPGVGSDPVNQQGTDGFPVKSDPQQSAASLSRYREKKKERCFDKKVRYDVRKELALRMERKKGQFVSSKGIADEDEGSSSVLAQSSDSNQDDALLETSSKSTPMMRRGPAGPMTLCNACGLQWSTKGTMRDLSKVSIADIRKPSAKETEQIMNQMLQINVGGKSDAVNRS 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8489678 8493421 + Sed0017018.1 Sed06g0794 717337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0794 268 MobiDBLite consensus disorder prediction 163 206 - -
Sed06g0794 268 CDD ZnF_GATA 196 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0794 268 MobiDBLite consensus disorder prediction 176 202 - -
Sed06g0794 268 MobiDBLite consensus disorder prediction 103 128 - -
Sed06g0794 268 ProSiteProfiles Tify domain profile. 57 92 IPR010399 -
Sed06g0794 268 Gene3D - 194 249 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed06g0794 268 ProSiteProfiles CCT domain profile. 124 166 IPR010402 GO:0005515(InterPro)
Sed06g0794 268 MobiDBLite consensus disorder prediction 1 15 - -
Sed06g0794 268 MobiDBLite consensus disorder prediction 1 20 - -
Sed06g0794 268 SMART GATA_3 196 238 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0794 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 234 - -
Sed06g0794 268 PANTHER GATA TRANSCRIPTION FACTOR 28 34 247 IPR045280 GO:0006355(InterPro)
Sed06g0794 268 Pfam GATA zinc finger 198 227 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0794 268 Pfam CCT motif 126 166 IPR010402 GO:0005515(InterPro)
Sed06g0794 268 MobiDBLite consensus disorder prediction 100 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0794 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0794 Sed-Chr6:8489678 Sed10g1896 Sed-Chr10:35776240 7.20E-74 dispersed
Sed06g0793 Sed-Chr6:8471988 Sed06g0794 Sed-Chr6:8489678 1.30E-17 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed09g0734 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed09g0735 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed04g1936 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
Sed04g1935 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38842 PF06203 CCT 5.00E-16 CL0281 Sed TF