Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0796 ATGTTGCGGTTGTCGATTCGGCGAGTGAACAAATCGAGTGTTCTTAGGCCTCAGATCTTTGCTCTTGGAAATTCTCGTTTCTCCACCTTCGCTGTACCGTCTTCGAAGCTTAATCCTCCGAAAGTTCCCAATCTTATAGGAGGGACATTTGTTGATTCTCGATCCTCAGCGTTTATTGATGTCATAAATCCAGCGACGCAGGAAGTTGTTTCTCAAGTTCCATTAACCACAAATGAAGAATTTAAAGCTGCAGTATCGGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACACCAGTTACAACTCGTCAAAGAATTATGTTAAAGCTTCAAGAACTTATTAGGCGAGATATTGACAAACTTGCTCTAAATATTACTACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATTCCGGGGATTAGAGGTTGTGGAACATGCCTGTGGAATGGCATCTCTGCAAATGGGAGAGTATGTCTCTAATGTGTCACATGGAATTGATACGTTTAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGCATTTGTCCATTCAATTTTCCAGCCATGATTCCTCTATGGATGTTCCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTAAAGCCTTCGGAAAAAGACCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGCGTCCTGAATGTGGTTCATGGTACTAATGATGTTGTCAATGCAATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTTGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTCCAGTCCAATATGGGGGCAAAAAATCATGCAATTGTCTTGCCTGATGCCAGTAGAGATGCTACTTTGAACGCTTTAGTTGCTGCTGGTTTTGGTGCTGCTGGTCAGAGATGCATGGCACTTAGTACAGTTGTCTTTGTCGGAGACTCCAAACAATTGGAGAATGAACTTGTTGAACGAGCCAACGCTCTGAAGGTAAATTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAAATGGCTAAGGAGAGAATTCACAGATTAGTTCAATCTGGCGTCGATGGTGGGGCCAGGCTACTACTAGATGGGAGAAACATAGTGGTTCCTGGATACGAGCATGGAAATTTTATTGGCCCTACTATCTTAACAGATGTGACACAGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTACTGCTTTGTATGCGGGCTGAAACATTAGAGGAAGCCATTAGCATCGTTAACGGAAATAGGTATGGCAATGGAGCTTCCATATTCACCACATCTGGAATCGCGGCGAGGAAGTTTCAAACGGATATCGAAGCTGGACAGGTTGGGATCAACGTTCCAATTCCCGTTCCCTTGCCCTTCTTTTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTACGGCAAGGCTGGGGTTAATTTCTTCACTCAGATCAAAACAGTGACACAACAATGGAAAGAATCACCTGGGGGAACTGCAATCAACCTTGCAATGCCAACCTCTTCCAAGTTATAA 1614 43.43 MLRLSIRRVNKSSVLRPQIFALGNSRFSTFAVPSSKLNPPKVPNLIGGTFVDSRSSAFIDVINPATQEVVSQVPLTTNEEFKAAVSAAKQAFPAWRNTPVTTRQRIMLKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASRDATLNALVAAGFGAAGQRCMALSTVVFVGDSKQLENELVERANALKVNSGTEPDADLGPVISKMAKERIHRLVQSGVDGGARLLLDGRNIVVPGYEHGNFIGPTILTDVTQDMECYKEEIFGPVLLCMRAETLEEAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKESPGGTAINLAMPTSSKL 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8498666 8509278 - Sed0006698.1 Sed06g0796 717339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0796 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491(InterPro)
Sed06g0796 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 518 IPR010061 GO:0004491(InterPro)
Sed06g0796 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 10 534 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Sed06g0796 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491(InterPro)
Sed06g0796 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491(InterPro)
Sed06g0796 537 SUPERFAMILY ALDH-like 37 519 IPR016161 GO:0016491(InterPro)
Sed06g0796 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 46 293 - -
Sed06g0796 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620(InterPro)
Sed06g0796 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 287 487 - -
Sed06g0796 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0796 Sed-Chr6:8498666 Sed10g0810 Sed-Chr10:5863751 4.30E-179 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0796 K00140 - csv:101204924 978.008