Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0797 ATGTATTCTGAATCTTGTTCATCGTTGCTGTTGTTGTTGATTTTCACTTTCTTCTTCCATTGTTGCACCTCCGCCAATTTCTCCTTCTCTTCTTTCCCCAATTTAGCCAATATCACTCTCGTCAACAGCGCCTCAAGAGGCACTGTTCTGAACCATCCATCGCTCCGCCTCACCGACAACCAGATCGGCGGCAGTGTGTTCAACGACACCGGAAGAGCTTACTACTCGGAGCCGGTTCAGCTCTGGGATCCAACCACGAACGAATCTGCCGATTTCTCTACGTATTTCGAGTTCGTGATCTTGTTCACCAACGGGAGGGGAAACGCCTCCGCCGGTGGAATCGCCTTCTTCTTAGCTTCCGAGGATTCGGCATTGCCTCCTTTGAACTCCGGCGGCGGATGGCTGGGGTTGTTTAATGAGTCCAATAATGGAAACTCGACGAATCGGATTGTTGCTGTTGAGTTCGATATTTTTCGAGATCCTTGGGATTCCAGTGATAATCATGTTGGTGTTGATGTGAATTCCATTGTGTCTGTTGCTAATCGTACTTGGAGTAATACTATGGTGTCTGGTGATATTTTGGGTGCGCGGATTACTTACAATGCTACGTTGAGGAGGTTGAGTGTTACTTTGAAAGACCCTCAGGTTCCGAACGAGTCGATTACGCTGAATCTTACTGATGTTCCTGTTAATTTGAGGGAAACTCTTCCGGCGAGAGTGATCGTTGGTTTCTCTGCATCTACGGGTCAGTCGATTCCGATTCAAGCGATTAGAAGTTGGAATTTCACTTCGAGTTTGGATCTGATTGTTGAAACTGTTGAGGGTAGATCCAAATTGTGGATTGTGGGGCTGGTCTCTGGATTGGTGGGCGTCATATTTGCGTCTGGTTTGGTATTTGGTTTGTGGAAAATAAGGACAAGGAGGAGACAGAAAGAAAGAGATGAAAAAGATGGTGATGATGAATTTGAAGATGAAGAAATTGGCATGATGGACAATGCTGTTGATGAGGAATTCATAAAAGGAACTGGGCCAAAGAGATTTGCTTATAAGGAATTGGTTAAAGCAACCAACAATTTTTCTGAAGAGGGAAAGCTTGGACAAGGGGGTTTTGGTGGTGTTTACAAAGGTTTTGTAACAGAACTAAACATGGAAATAGCAGCAAAGAAGATATCAAGCAATTCCAAACAGGGCAAAAAGGAGTACATCTCTGAGGTGAATATCATAAGCCGTTTGCGACATCGAAATCTTGTTCAACTCGTCGGATATAGCCACGAACGCGGCCATTTCTTACTCGTCTATGAGTACATGCCGAATGGGAGCTTGGATTTCCATTTGTTCGGTAAGAAACCGCGCCTCTCCTGGCCTGTAAGATACAAAATAGCTCAAGGCATAGCCTCCGCCTTGCTCTATCTCCATGAGGAGTGGGAACAATGCGTTGTCCACAGAGATATCAAGTCAAGCAATGTGATGTTGGACTCCAACTTCAACGCGAAAGTTGGCGACTTCGGTCTAGCCAGGCTAGTCGACCACGGCCTCCGTTCGCCCACGACAGTCGTGGCAGGCACGATGGGCTACCTAGCTCCCGAGTCTCTCCTTACGAGTAAAGCAAGCAAGGAATCCGACGTATATAGTTTCGGGGTTGTGGCATTGGAGATAGCTTGTGGGAGAAAAGCAGTGGAGCACCATGAAGAAGAAGAAAAGATCAGTTTGGTGAGTTGGGTTTGGGGGCTATATGGACAAGGAAGGGTTCTAGAGGCAGCTGATAAGGCATTGAATGGAGAGTTCAGCCAAGAAGAAATTGTGTGTTTGATGACTGTGGGGCTGTGGTGTGCACACCCAAATCATAACCTTAGGGCTTCCATAAGGCAAGCAATTCAGGTGCTTAACTTTGAAGCCCCTTTGCCTAAACTCCCAACACAAATGCCTGTGCCTATGTTCTATGCCCCCACTGCTCCCAATGAGAACCCTTTTTCTTATGCTTACTCAACAACCAACACACAATTATCTTTGCTATCTGATACTTCTCAGCCTGTTTCCTCCAAATCATCCTTGTAA 2055 46.08 MYSESCSSLLLLLIFTFFFHCCTSANFSFSSFPNLANITLVNSASRGTVLNHPSLRLTDNQIGGSVFNDTGRAYYSEPVQLWDPTTNESADFSTYFEFVILFTNGRGNASAGGIAFFLASEDSALPPLNSGGGWLGLFNESNNGNSTNRIVAVEFDIFRDPWDSSDNHVGVDVNSIVSVANRTWSNTMVSGDILGARITYNATLRRLSVTLKDPQVPNESITLNLTDVPVNLRETLPARVIVGFSASTGQSIPIQAIRSWNFTSSLDLIVETVEGRSKLWIVGLVSGLVGVIFASGLVFGLWKIRTRRRQKERDEKDGDDEFEDEEIGMMDNAVDEEFIKGTGPKRFAYKELVKATNNFSEEGKLGQGGFGGVYKGFVTELNMEIAAKKISSNSKQGKKEYISEVNIISRLRHRNLVQLVGYSHERGHFLLVYEYMPNGSLDFHLFGKKPRLSWPVRYKIAQGIASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNAKVGDFGLARLVDHGLRSPTTVVAGTMGYLAPESLLTSKASKESDVYSFGVVALEIACGRKAVEHHEEEEKISLVSWVWGLYGQGRVLEAADKALNGEFSQEEIVCLMTVGLWCAHPNHNLRASIRQAIQVLNFEAPLPKLPTQMPVPMFYAPTAPNENPFSYAYSTTNTQLSLLSDTSQPVSSKSSL 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8513211 8515888 + Sed0021314.1 Sed06g0797 717340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0797 684 Gene3D - 23 275 - -
Sed06g0797 684 ProSiteProfiles Protein kinase domain profile. 359 637 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0797 684 ProSitePatterns Protein kinases ATP-binding region signature. 365 389 IPR017441 GO:0005524(InterPro)
Sed06g0797 684 PANTHER - 29 650 IPR050528 GO:0005886(PANTHER)
Sed06g0797 684 Pfam Protein kinase domain 360 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0797 684 SMART serkin_6 359 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0797 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0797 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 267 IPR013320 -
Sed06g0797 684 FunFam Lectin-domain containing receptor kinase A4.3 436 648 - -
Sed06g0797 684 Gene3D Phosphorylase Kinase; domain 1 344 435 - -
Sed06g0797 684 Gene3D Transferase(Phosphotransferase) domain 1 436 649 - -
Sed06g0797 684 Pfam Legume lectin domain 25 265 IPR001220 GO:0030246(InterPro)
Sed06g0797 684 SUPERFAMILY Protein kinase-like (PK-like) 344 658 IPR011009 -
Sed06g0797 684 CDD STKc_IRAK 373 629 - -
Sed06g0797 684 FunFam L-type lectin-domain containing receptor kinase IX.1 344 435 - -
Sed06g0797 684 CDD lectin_legume_LecRK_Arcelin_ConA 26 266 IPR001220 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0797 Sed-Chr6:8513211 Sed13g1063 Sed-Chr13:9175758 8.30E-175 dispersed
Sed06g0797 Sed-Chr6:8513211 Sed06g0798 Sed-Chr6:8520022 2.40E-150 tandem
Sed10g1907 Sed-Chr10:35829293 Sed06g0797 Sed-Chr6:8513211 1.70E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79348 PF00069 Pkinase 4.40E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0797 - - - 0.0