Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0811 ATGTTGGAACCGGTTAGTTGCTGCCAGAGCTCACAGTTCCAGGTTTATAGTGTAGTTAAACAGAAGAATCCTTTCGGTGTATACTCTCATACTGTTCATCAACTTTGTGGACCTTCCTTCAACTTACACCATTCACACTCAAAGAAAGTGGTTGTTCCATCTAGCACCTTAAATTCTTGGAGAAATGATTATTCTTTGGTCCCTGTACTTTCCCACAACAGTGCTACTACGTTAACGTTCAAAGTAGCTGCACGGAATGGATACAATTGGTCTAATCAAAGGCCTAAACCAAGGGGAAGATTAAGAATGCATGCAGCTCTGGATGTTGCAGCTGCTGTTGATGTCATCAATGATTTAGGATTGGATACATTGACATTCCTAGCTGTGACTGTCATAGTTGTTCCTCTATTTAGGAGAATTAAAGCTAGCCCTATACTTGGTTTCTTCTTTGCGGGGATTGTACTTAATCAATTTGGCGTGATTAGAAATCTTATAGATGTCAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGCTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCAAAGTTTGCCTTCGGCATGGGCTTGACACAGGTCATATTATCCACTATCGCTTTCACAGCATTTGAACTTCCCCCTAATGGGGCTATTGGAACAAGAATTTTGGAGTTCCTTTTTCACGCTCGATCTGACTTGGTTAACATTAGAAGCATTGATGAAGCTATTGTGATTGGTGCTGCCCTTTCCTTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTTGCAACAAGATTTGGGTCAGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCCTTGTCATACTTCCAGTTCTTGAGAGCCAGAATTTGGGCTCGGAAAGTATTTGGCCAATGCTTGCACAAGAAAGTTTGAAGGCCTTAGGTGGACTTGGTCTGCTGTCTCTTGGAGGAAAGTTGATTCTTAGACGCGTTTTTGAGGTTGTTGCAGAAGCAAGAAGCTCAGAGGCTTTTGTGGCTCTTTGCCTTCTAACAGTTGCTAGCACTTCACTAATCACTCAGAAATTGGGCTTTAGTGATACGCTAGGAGCATTTTTGGCTGGGGCAATATTAGCAGAAACTAATTTCCGGACACAGATTGAAGCAGATATTAGGCCATTTAGGGGCTTACTCCTTGGGTTGTTCTTTGTTACCACAGGGACCTCCATTGATATCGAGCTCTTGTTCCGAGAATGGCCAAATGTCCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCCCGTGTGGGGCTCACTACTCAAGAAAGTGTAAGAATAGGATTTCTTCTATCTCAAGGAGGCGAGTTCGGATTTGTAGTGTTTTCTCTAGCTAACAGGCTTGGAGTGCTACCACTTGAGTTAAACAAGCTGCTCATCATTATTGTTGTCTTGTCAATGGCTCTAACCCCCTTGCTTAATGAAGCTGGACGAAAGGCGTCTGACTTTATCAGCGAAAAGTACAAGACAGACGATAATTCTGCAGACACAGTGAATTTTAACGCAACTGAACCTGTTGTCATTGTTGGATTTGGACAAATGGGTCAGGTCCTGGCGAATTTCTTATCTTCATCTGGGGTAGATGGCAATACTCCTGGATGGCCATTTGTAGCATTTGACATTGATCTTTCCGTAGTGAAGAGGTCAAGAAAGCTTGGTTTTCCTGTTCTCTATGGAGACGGATCACGACCAGCAGTTTTACAATCTGCTGGGATCTCTTCTCCGAAAGCTGTCATGGTTATGTTCACAGAGAAGAAGGAAACAATCGAGGCTGTTCAAAAACTCCGACTTGCTTTTCCATCGATCCCAATTTATGCTCTAGCTAAGGACGTGGTGCATCTATTAGATTTAAAGAATGCCGGTGCGACAGATGCAATTCTGGAAGAGGCTGAGACTAGTTTACAACTTGGGTCAAAGCTTTTGAAAGGGCTCGGCGTCATGTCTGACCAAGTGTCGTTCCTCAGTCAGATGGTTCGCAGCTCTATGGAAGTGCAAGCTCAAGATTCACTTGACAAACCCAATGAGCAAGAGTTAGAGATTATGAAACCCCTGCAGATACGCGTCAAGGACTCGATCGTGGACGAACTGTCCAGGTTGAACCAGGAAGATAATCCTCAGATCTTAAATGGCAAAGAAAGGGATGAAAGGAAGCAAGATTTAGATGGAAAGGGAGTCCTATACTGTGAACTTGATACAGAGGAAAACTTTATTGAGCAAAATATGGTAGAGTCCCCAAGCCCTTACATGACAGCCTCTGAGGGTTTAGAAAAGTGA 2382 43.07 MLEPVSCCQSSQFQVYSVVKQKNPFGVYSHTVHQLCGPSFNLHHSHSKKVVVPSSTLNSWRNDYSLVPVLSHNSATTLTFKVAARNGYNWSNQRPKPRGRLRMHAALDVAAAVDVINDLGLDTLTFLAVTVIVVPLFRRIKASPILGFFFAGIVLNQFGVIRNLIDVKVLSEWGILFLLFEMGLELSFARLKALAKFAFGMGLTQVILSTIAFTAFELPPNGAIGTRILEFLFHARSDLVNIRSIDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGSESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVASTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDIELLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASDFISEKYKTDDNSADTVNFNATEPVVIVGFGQMGQVLANFLSSSGVDGNTPGWPFVAFDIDLSVVKRSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKETIEAVQKLRLAFPSIPIYALAKDVVHLLDLKNAGATDAILEEAETSLQLGSKLLKGLGVMSDQVSFLSQMVRSSMEVQAQDSLDKPNEQELEIMKPLQIRVKDSIVDELSRLNQEDNPQILNGKERDERKQDLDGKGVLYCELDTEENFIEQNMVESPSPYMTASEGLEK 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8663139 8674784 + Sed0020177.2 Sed06g0811 717354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0811 793 Pfam Sodium/hydrogen exchanger family 129 510 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed06g0811 793 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 66 730 - GO:0009507(PANTHER)|GO:0016020(PANTHER)
Sed06g0811 793 Gene3D - 118 517 IPR038770 -
Sed06g0811 793 FunFam K(+) efflux antiporter 3, chloroplastic 118 517 - -
Sed06g0811 793 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 541 676 IPR036291 -
Sed06g0811 793 Gene3D - 539 705 - -
Sed06g0811 793 ProSiteProfiles RCK N-terminal domain profile. 541 670 IPR003148 GO:0006813(InterPro)
Sed06g0811 793 Pfam TrkA-N domain 542 662 IPR003148 GO:0006813(InterPro)
Sed06g0811 793 FunFam Glutathione-regulated potassium-efflux system protein KefB 539 708 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0811 Sed-Chr6:8663139 Sed12g0182 Sed-Chr12:1036950 3.40E-87 dispersed
Sed06g0810 Sed-Chr6:8663139 Sed06g0811 Sed-Chr6:8663139 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0811 K03455 - csv:101209266 1301.96