Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0838 ATGAAGAACAATAACTTCTTGACTTTCTTCTCTTTCTCTCTTCTTCTCACAATCTCCTTCAACGTCTCTCCATCTTTCGAAATCGGCAGCATCGACTTCCCTTTTTGGGGTAAAGATCGTTCCCCGAGCTGCGGGGTTCCTGAGCTGAAACTCACCTGCAACAATAATGTCACTGAGATAGAGATCATGCAAGTGAAGTATAGAGTTTTTGAGGTGAATTCAAGCGCGAAAACGCTCAAGATTGCACGGAACGACTATATCAACGGAATTTGCCCACAAACCCATCTGAAGAACAAGAGCCTGGACCCAAATGTGTTCGAAATCGGCAATGAGTTCGTGAATTTGACACTGCTTTATGGGTGCGATTCATCCGTTTTGGTTGTTCCTGAGCACTGGAGATTTGGGTGCCCTGCTCATGGAGATGGGCCACCGTCGCGGTCCCGGTCGAGACTTCTGGTCGATGTTTTGAAGATGGAAGAAGCCATTAAAGAAGGGTTTGAAGTGAAATGGAAGGTGGATAGTGGTGGTTGTGGTGCTCAATGTGTCGGCTCCGGTGGCGTTTGTGGTTACGATTCGAAGCTCCGCAGCGGGATTTGTTTCTGTAAGAGTGGGTTTTCTTCTTCTTCGCCGGTGGATGTCAACCTCTCTCTTGGGGCAACCCGTGAAATGTACCCTTTGTTTTTATCTCCAGGTCTTTCTGTTGGAGGGGCAACTGTAATATGCCTATGCTTAGGATGTTGTTTCTTCTATATTACACAAGGAAAAAAGAAACATGTTGACTTGAAGTTGAAAAGCAAAGATCTTCCTTCACCTCTTTCAAGTGCACGCGTTCCAACTCCGACAACGTTTCTCTCTGATAGCATTCCTTCCTATCCTTATCCGAGGTCTGATCTCGAGCATAGGAGCTCCTACTTTGGAGCTCAAGTCTTTACCTATGTTGAGCTTGAGGAAGCAACTCATAATTTTGACACTTCGAGGGAGCTTGGAGATGGAGGTTATGGTACTGTTTACTCTGGAACACTCAAGGATGGACAGATAGTTGCAGTAAAGCGCCTATATGAAAACAATTACAAACGTGTCAAGCAGTTCTTGAATGAAGTTGAAATTCTATCACGATTACAACACCCGAATCTTGTGAAGCTTTATGGATGCACATCGAGACATAGTCGAGAACTACTCTTAGTATATGAATACATTCCTAATGGAACAGTGGCTGACCATCTGCATGGAAATAGAGCAAAGTCTGGTTTGCTCAGTTGGTCTGTTAGGCTGAAGATTGCTATAGAGACTGCTAATGCACTGGCTTACCTCCATCGCAAAGACATCATCCATCACAACACCTTCAAAGTGAAAGTGGCTGATTTCGGCCTGTCACGGTTATTTCCTGTTGATGTTAGTCATGTTTCAACTGCTCCACAGGGAACACCAGGCTATGTTGACCCTGAGTATTATCAAGGCTACCAACTTACCGACAAGAGCGACGTGTATAGCTTTGGAGTTGTTTTGGTTGAACTTATATCGTCACTGCAAGCAGTTGACATCAACAGAAACAGAAATGACATCAACTTGTCGAATATGGCCATTGATAGAATTCAAAAACATGCTTTACGTGATTTAGTTGATTCAGATCTTGGGTTTGAGAGGGATTATGCAGTAAGGTCTATGATAACATCCGTAGCAGAGTTGGCTTTTCGATGTCTTCAACAGGCACGGGATCTAAGGCCTTCCATGGGCGAAGTGCTAGAAGTTCTGAGAGAAATAGAGAAGAAAGAACCAGATGCTCGTAAAGCAGAAGTGTTGGATTTAGGATTTGATAATGTACAACTTTTTTAG 1833 43.86 MKNNNFLTFFSFSLLLTISFNVSPSFEIGSIDFPFWGKDRSPSCGVPELKLTCNNNVTEIEIMQVKYRVFEVNSSAKTLKIARNDYINGICPQTHLKNKSLDPNVFEIGNEFVNLTLLYGCDSSVLVVPEHWRFGCPAHGDGPPSRSRSRLLVDVLKMEEAIKEGFEVKWKVDSGGCGAQCVGSGGVCGYDSKLRSGICFCKSGFSSSSPVDVNLSLGATREMYPLFLSPGLSVGGATVICLCLGCCFFYITQGKKKHVDLKLKSKDLPSPLSSARVPTPTTFLSDSIPSYPYPRSDLEHRSSYFGAQVFTYVELEEATHNFDTSRELGDGGYGTVYSGTLKDGQIVAVKRLYENNYKRVKQFLNEVEILSRLQHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGNRAKSGLLSWSVRLKIAIETANALAYLHRKDIIHHNTFKVKVADFGLSRLFPVDVSHVSTAPQGTPGYVDPEYYQGYQLTDKSDVYSFGVVLVELISSLQAVDINRNRNDINLSNMAIDRIQKHALRDLVDSDLGFERDYAVRSMITSVAELAFRCLQQARDLRPSMGEVLEVLREIEKKEPDARKAEVLDLGFDNVQLF 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9127490 9142692 - Sed0015097.1 Sed06g0838 717381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0838 610 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 30 591 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Sed06g0838 610 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 297 398 - -
Sed06g0838 610 Gene3D Phosphorylase Kinase; domain 1 295 398 - -
Sed06g0838 610 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524(InterPro)
Sed06g0838 610 Gene3D Transferase(Phosphotransferase) domain 1 399 601 - -
Sed06g0838 610 SUPERFAMILY Protein kinase-like (PK-like) 303 590 IPR011009 -
Sed06g0838 610 FunFam Wall-associated receptor kinase-like 20 399 597 - -
Sed06g0838 610 Pfam Wall-associated receptor kinase galacturonan-binding 30 83 IPR025287 GO:0030247(InterPro)
Sed06g0838 610 Pfam Wall-associated receptor kinase C-terminal 154 203 IPR032872 -
Sed06g0838 610 Pfam Protein kinase domain 323 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0838 610 ProSiteProfiles Protein kinase domain profile. 322 587 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0651 Sed-Chr3:3949703 Sed06g0838 Sed-Chr6:9127490 1.70E-124 dispersed
Sed06g0838 Sed-Chr6:9127490 Sed12g2091 Sed-Chr12:31645635 2.70E-124 dispersed
Sed06g0838 Sed-Chr6:9127490 Sed06g1431 Sed-Chr6:39091477 1.90E-194 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79351 PF00069 Pkinase 5.40E-38 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0838 - - - 0.0