Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0853 ATGCCTGCAGAGAAACATGATGAGAGACCTAAGATGATTAGTACAGATTCAAATGAAGAGAACTCGCCACCGAAACTAGCAGCGGCAACAACAACAACAGCAGCTTCATCAAGCTCATTTACGGCGACGCCATGGCTTAGGCTGAAGGATCCAAGGATCGTACGCGTGTCCCGTGCTTTCGGAGGCAAGGATCGACATAGCAAAGTTTGTACCATAAGAGGTCTGCGCGACAGGCGCGTAAGGCTTTCGGTTCCAACAGCAATCCAACTCTATGATCTTCAAGACCGCCTCGGCCTTAACCAACCAAGCAAGGTTGTCGACTGGTTGCTCAATGCTGCCAAGGATGACATCGACGAACTGCCTCCATTGCCAATCCCATCGGAAAGCCTCGGCCTTAACTACCAATCCATGCTTCTACCTCACACCCAGACTCATCCGCATAGATGGGAGTTCAAAATCAACTGCAACGGCACCGGAAAGGAAGCCGAGGAAGACACCAATGCCGCCCTCGAACGAAAGGAACACAGATCCAATTCTAATCCCTCTCACCCTTCATCCTTCTCAGCCATTTTGAACAATATGGCTACCTCTCCATATGGGTACCATCATTTGGAGCCATCATCAACTAATCTTCCATTTTTTACATCCCAAGCTGAGCATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTATCCCTCTCAACTGGCTCTCAGTTCTTGGAATTCAATCACTTGAACCAAAATTTCTTGATCAACTCCAATTCTCATGCACATCATTTGCACTCAATCAACCAATCTGCTATTAGGCCCTTCCATTTCAGTATGGCTCCCAAATTCATTTCTCAAGAGAAGAATATGAATGGATATCCACCAAATAAGGATAATGGTTTTGGTTCTGACAAATGA 918 45.86 MPAEKHDERPKMISTDSNEENSPPKLAAATTTTAASSSSFTATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDDIDELPPLPIPSESLGLNYQSMLLPHTQTHPHRWEFKINCNGTGKEAEEDTNAALERKEHRSNSNPSHPSSFSAILNNMATSPYGYHHLEPSSTNLPFFTSQAEHLHNFNNVNLSLPSPLSLSTGSQFLEFNHLNQNFLINSNSHAHHLHSINQSAIRPFHFSMAPKFISQEKNMNGYPPNKDNGFGSDK 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9558007 9559778 - Sed0010316.1 Sed06g0853 717396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0853 305 ProSiteProfiles TCP domain profile. 62 120 IPR017887 -
Sed06g0853 305 MobiDBLite consensus disorder prediction 1 15 - -
Sed06g0853 305 MobiDBLite consensus disorder prediction 164 179 - -
Sed06g0853 305 MobiDBLite consensus disorder prediction 286 305 - -
Sed06g0853 305 Pfam TCP family transcription factor 62 156 IPR017887 -
Sed06g0853 305 MobiDBLite consensus disorder prediction 160 187 - -
Sed06g0853 305 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 263 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Sed06g0853 305 MobiDBLite consensus disorder prediction 16 35 - -
Sed06g0853 305 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0853 Sed-Chr6:9558007 Sed08g0281 Sed-Chr8:1662057 3.70E-34 dispersed
Sed06g0853 Sed-Chr6:9558007 Sed06g0854 Sed-Chr6:9558007 2.90E-143 tandem
Sed01g2290 Sed-Chr1:17339961 Sed06g0853 Sed-Chr6:9558007 3.10E-24 wgd
Sed12g2014 Sed-Chr12:31003969 Sed06g0853 Sed-Chr6:9558007 2.00E-33 wgd
Sed06g0853 Sed-Chr6:9558007 Sed06g1441 Sed-Chr6:39246876 8.10E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38843 PF03634 TCP 3.40E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0853 - - - 0.0