Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0853 ATGCCTGCAGAGAAACATGATGAGAGACCTAAGATGATTAGTACAGATTCAAATGAAGAGAACTCGCCACCGAAACTAGCAGCGGCAACAACAACAACAGCAGCTTCATCAAGCTCATTTACGGCGACGCCATGGCTTAGGCTGAAGGATCCAAGGATCGTACGCGTGTCCCGTGCTTTCGGAGGCAAGGATCGACATAGCAAAGTTTGTACCATAAGAGGTCTGCGCGACAGGCGCGTAAGGCTTTCGGTTCCAACAGCAATCCAACTCTATGATCTTCAAGACCGCCTCGGCCTTAACCAACCAAGCAAGGTTGTCGACTGGTTGCTCAATGCTGCCAAGGATGACATCGACGAACTGCCTCCATTGCCAATCCCATCGGAAAGCCTCGGCCTTAACTACCAATCCATGCTTCTACCTCACACCCAGACTCATCCGCATAGATGGGAGTTCAAAATCAACTGCAACGGCACCGGAAAGGAAGCCGAGGAAGACACCAATGCCGCCCTCGAACGAAAGGAACACAGATCCAATTCTAATCCCTCTCACCCTTCATCCTTCTCAGCCATTTTGAACAATATGGCTACCTCTCCATATGGGTACCATCATTTGGAGCCATCATCAACTAATCTTCCATTTTTTACATCCCAAGCTGAGCATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTATCCCTCTCAACTGGCTCTCAGTTCTTGGAATTCAATCACTTGAACCAAAATTTCTTGATCAACTCCAATTCTCATGCACATCATTTGCACTCAATCAACCAATCTGCTATTAGGCCCTTCCATTTCAGTATGGCTCCCAAATTCATTTCTCAAGAGAAGAATATGAATGGATATCCACCAAATAAGGATAATGGTTTTGGTTCTGACAAATGA 918 45.86 MPAEKHDERPKMISTDSNEENSPPKLAAATTTTAASSSSFTATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDDIDELPPLPIPSESLGLNYQSMLLPHTQTHPHRWEFKINCNGTGKEAEEDTNAALERKEHRSNSNPSHPSSFSAILNNMATSPYGYHHLEPSSTNLPFFTSQAEHLHNFNNVNLSLPSPLSLSTGSQFLEFNHLNQNFLINSNSHAHHLHSINQSAIRPFHFSMAPKFISQEKNMNGYPPNKDNGFGSDK 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9558007 9559778 - Sed0010316.1 Sed06g0853 717396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0853 305 ProSiteProfiles TCP domain profile. 62 120 IPR017887 -
Sed06g0853 305 MobiDBLite consensus disorder prediction 1 15 - -
Sed06g0853 305 MobiDBLite consensus disorder prediction 164 179 - -
Sed06g0853 305 MobiDBLite consensus disorder prediction 286 305 - -
Sed06g0853 305 Pfam TCP family transcription factor 62 156 IPR017887 -
Sed06g0853 305 MobiDBLite consensus disorder prediction 160 187 - -
Sed06g0853 305 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 263 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Sed06g0853 305 MobiDBLite consensus disorder prediction 16 35 - -
Sed06g0853 305 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0853 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0853 Sed-Chr6:9558007 Sed08g0281 Sed-Chr8:1662057 3.70E-34 dispersed
Sed06g0853 Sed-Chr6:9558007 Sed06g0854 Sed-Chr6:9558007 2.90E-143 tandem
Sed01g2290 Sed-Chr1:17339961 Sed06g0853 Sed-Chr6:9558007 3.10E-24 wgd
Sed12g2014 Sed-Chr12:31003969 Sed06g0853 Sed-Chr6:9558007 2.00E-33 wgd
Sed06g0853 Sed-Chr6:9558007 Sed06g1441 Sed-Chr6:39246876 8.10E-106 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2387 . 25 228 TCP Transcription Factor Family AT5G23280 63.8 1.1e-60 231.1
Sed04g2781 . 38 242 TCP Transcription Factor Family AT5G23280 58.0 1.4e-55 214.2
Sed03g0942 . 56 255 TCP Transcription Factor Family AT5G23280 59.0 4.1e-55 212.6
Sed04g2197 . 21 318 TCP Transcription Factor Family AT2G45680 52.3 1.4e-69 261.2
Sed06g1538 . 56 171 TCP Transcription Factor Family AT3G47620 78.8 1.7e-41 168.3
Sed08g2057 . 39 140 TCP Transcription Factor Family AT3G47620 81.4 1.1e-38 159.1
Sed08g1502 . 48 300 TCP Transcription Factor Family AT3G27010 55.4 4.5e-59 226.1
Sed06g0434 . 8 269 TCP Transcription Factor Family AT3G27010 53.9 6.5e-58 222.2
Sed07g2387 . 1 227 TCP Transcription Factor Family AT5G08330 58.4 1.2e-56 217.6
Sed03g0942 . 36 261 TCP Transcription Factor Family AT5G08330 58.3 1.6e-56 217.2
Sed04g2781 . 25 239 TCP Transcription Factor Family AT5G08330 56.1 5.1e-55 212.2
Sed13g0592 . 31 378 TCP Transcription Factor Family AT1G53230 52.9 3.6e-82 303.1
Sed06g0853 . 45 205 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g0854 . 43 203 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g1441 . 44 153 TCP Transcription Factor Family AT3G02150 70.2 2.5e-37 154.1
Sed04g1559 . 190 399 TCP Transcription Factor Family AT2G31070 50.5 3.7e-41 166.8
Sed13g0592 . 30 215 TCP Transcription Factor Family AT2G31070 53.9 4.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38843 PF03634 TCP 3.40E-27 No_clan Sed TF