Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0854 | ATGCAGAAACATGATGAGAGACCTAAGATGATTAGTACAGATTCAAATGAAGAGAACTCGCCACCGAAACTAGCAGCGGCAACAACAACAACAGCAGCTTCATCAAGCTCATTTACGGCGACGCCATGGCTTAGGCTGAAGGATCCAAGGATCGTACGCGTGTCCCGTGCTTTCGGAGGCAAGGATCGACATAGCAAAGTTTGTACCATAAGAGGTCTGCGCGACAGGCGCGTAAGGCTTTCGGTTCCAACAGCAATCCAACTCTATGATCTTCAAGACCGCCTCGGCCTTAACCAACCAAGCAAGGTTGTCGACTGGTTGCTCAATGCTGCCAAGGATGACATCGACGAACTGCCTCCATTGCCAATCCCATCGGAAAGCCTCGGCCTTAACTACCAATCCATGCTTCTACCTCACACCCAGACTCATCCGCATAGATGGGAGTTCAAAATCAACTGCAACGGCACCGGAAAGGAAGCCGAGGAAGACACCAATGCCGCCCTCGAACGAAAGGAACACAGATCCAATTCTAATCCCTCTCACCCTTCATCCTTCTCAGCCATTTTGAACAATATGGCTACCTCTCCATATGGGTACCATCATTTGGAGCCATCATCAACTAATCTTCCATTTTTTACATCCCAAGCTGAGCATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTATCCCTCTCAACTGGCTCTCAGTTCTTGGAATTCAATCACTTGAACCAAAATTTCTTGATCAACTCCAATTCTCATGCACATCATTTGCACTCAATCAACCAATCTGCTATTAGGCCCTTCCATTTCAGTATGGCTCCCAAATTCATTTCTCAAGAGAAGAATATGAATGGATATCCACCAAATAAGGATAATGGTTTTGGTTCTGACAAATGA | 912 | 45.72 | MQKHDERPKMISTDSNEENSPPKLAAATTTTAASSSSFTATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDDIDELPPLPIPSESLGLNYQSMLLPHTQTHPHRWEFKINCNGTGKEAEEDTNAALERKEHRSNSNPSHPSSFSAILNNMATSPYGYHHLEPSSTNLPFFTSQAEHLHNFNNVNLSLPSPLSLSTGSQFLEFNHLNQNFLINSNSHAHHLHSINQSAIRPFHFSMAPKFISQEKNMNGYPPNKDNGFGSDK | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9558007 | 9559778 | - | Sed0010316.2 | Sed06g0854 | 717397 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0854 | 303 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 23 | 261 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER) | |
Sed06g0854 | 303 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Sed06g0854 | 303 | ProSiteProfiles | TCP domain profile. | 60 | 118 | IPR017887 | - | |
Sed06g0854 | 303 | MobiDBLite | consensus disorder prediction | 162 | 177 | - | - | |
Sed06g0854 | 303 | MobiDBLite | consensus disorder prediction | 284 | 303 | - | - | |
Sed06g0854 | 303 | MobiDBLite | consensus disorder prediction | 158 | 185 | - | - | |
Sed06g0854 | 303 | MobiDBLite | consensus disorder prediction | 14 | 33 | - | - | |
Sed06g0854 | 303 | Pfam | TCP family transcription factor | 60 | 154 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0854 | Sed-Chr6:9558007 | Sed06g1441 | Sed-Chr6:39246876 | 7.50E-104 | dispersed | |
Sed06g0853 | Sed-Chr6:9558007 | Sed06g0854 | Sed-Chr6:9558007 | 2.90E-143 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38844 | PF03634 | TCP | 3.40E-27 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0854 | - | - | - | 0.0 |