Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0854 ATGCAGAAACATGATGAGAGACCTAAGATGATTAGTACAGATTCAAATGAAGAGAACTCGCCACCGAAACTAGCAGCGGCAACAACAACAACAGCAGCTTCATCAAGCTCATTTACGGCGACGCCATGGCTTAGGCTGAAGGATCCAAGGATCGTACGCGTGTCCCGTGCTTTCGGAGGCAAGGATCGACATAGCAAAGTTTGTACCATAAGAGGTCTGCGCGACAGGCGCGTAAGGCTTTCGGTTCCAACAGCAATCCAACTCTATGATCTTCAAGACCGCCTCGGCCTTAACCAACCAAGCAAGGTTGTCGACTGGTTGCTCAATGCTGCCAAGGATGACATCGACGAACTGCCTCCATTGCCAATCCCATCGGAAAGCCTCGGCCTTAACTACCAATCCATGCTTCTACCTCACACCCAGACTCATCCGCATAGATGGGAGTTCAAAATCAACTGCAACGGCACCGGAAAGGAAGCCGAGGAAGACACCAATGCCGCCCTCGAACGAAAGGAACACAGATCCAATTCTAATCCCTCTCACCCTTCATCCTTCTCAGCCATTTTGAACAATATGGCTACCTCTCCATATGGGTACCATCATTTGGAGCCATCATCAACTAATCTTCCATTTTTTACATCCCAAGCTGAGCATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTATCCCTCTCAACTGGCTCTCAGTTCTTGGAATTCAATCACTTGAACCAAAATTTCTTGATCAACTCCAATTCTCATGCACATCATTTGCACTCAATCAACCAATCTGCTATTAGGCCCTTCCATTTCAGTATGGCTCCCAAATTCATTTCTCAAGAGAAGAATATGAATGGATATCCACCAAATAAGGATAATGGTTTTGGTTCTGACAAATGA 912 45.72 MQKHDERPKMISTDSNEENSPPKLAAATTTTAASSSSFTATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDDIDELPPLPIPSESLGLNYQSMLLPHTQTHPHRWEFKINCNGTGKEAEEDTNAALERKEHRSNSNPSHPSSFSAILNNMATSPYGYHHLEPSSTNLPFFTSQAEHLHNFNNVNLSLPSPLSLSTGSQFLEFNHLNQNFLINSNSHAHHLHSINQSAIRPFHFSMAPKFISQEKNMNGYPPNKDNGFGSDK 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9558007 9559778 - Sed0010316.2 Sed06g0854 717397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0854 303 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 261 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Sed06g0854 303 MobiDBLite consensus disorder prediction 1 33 - -
Sed06g0854 303 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Sed06g0854 303 MobiDBLite consensus disorder prediction 162 177 - -
Sed06g0854 303 MobiDBLite consensus disorder prediction 284 303 - -
Sed06g0854 303 MobiDBLite consensus disorder prediction 158 185 - -
Sed06g0854 303 MobiDBLite consensus disorder prediction 14 33 - -
Sed06g0854 303 Pfam TCP family transcription factor 60 154 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0854 Sed-Chr6:9558007 Sed06g1441 Sed-Chr6:39246876 7.50E-104 dispersed
Sed06g0853 Sed-Chr6:9558007 Sed06g0854 Sed-Chr6:9558007 2.90E-143 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38844 PF03634 TCP 3.40E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0854 - - - 0.0