Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0860 ATGGCGGACTGTAAACCCAACCCGTTTGTTTCTTTCATATTCAGTTTCTTGATCCTCCCTGTTGCCGTCGTGTCCCAGGCCTACACACCCACAGACAACATAGTGCTTGATTGTGGTTCCCCTCAGAACTCAACTGTACCTGGTGATGCCCGGCCCTGGCTCAGCGATGTCAACTCCAAATTCTTCCTTTCCAATCAGAACGACATGTCGGTCATCGCACAAGCAGACCCGCAGTCCCCTCCGGTCCCCGGGCCCCCTTACTTAACGGCACGGCTGTCCCGCTCCGCGTTCACGTACTCTTTTCCGGTGAGCTCCGGCCAGAAATTCATTCGCCTTTACTTCTACTCTGCTCCCTACCCCAACTTCCAGCGCTCCCAAGCTGTGTTCTCCGTCACGGCTGGCGTCCACACTCTGCTTCGCGATTTCAACGCCTCCGTCAACGCCGACGCCTCTGATCATCCCGAGATTTCCCGCGAGTTCTGCGTGTTTGCGGAGGGAAACGGTGAGATACTTAACGTTACCTTTACTCCCACGAATGGAGACTCTTATGCGTTTGTGAGTGGGATTGAGATTGTGTCCATGCCTCCCAATCTTTACTACACCGAACAGGGTGGGACGGGGTTGAGATTCATCAACCGCAATAATGATTTCGTTGCGGTTGATAACCGTACATCTCTTGAGATGGTTTACAGGATGAATATTGGGGGGAACTCTATCTCCCCTTCAAAAGACACTGGAATGTTTCGAACTTGGTCACAGGAAAGTAATCTGTTGCCGGGGATGCCAGGGAATTCTCTTCCTACTAACGTATCGGCTGCTATCAATTACACTAAAATACAGAACTACTCGGCGCCGGAGGATGTGTATCGAACGGCCCGAACAATGGGACCGAATAGTATACTTAACCATTTGTACAATCTGACTTGGGAGTACCCTTTAGATCCTGGATTTCCCTACATGTTTCGACTTCATTTCTGCGAGTTTGAAGTTGAAATCAATGAAGCAGGTGACAGAGTGTTCTTGATTTATATTGGAGATGCTATAGCAGAGGATCAATTTGATGTGTTTCCACGAGCTGGCGGGAAAGATAGTCCTATTTATAGAGATTATGCTGTGTTTCTATCTCCCAGCAATCAAAAGAAAGTGAATCTCTCTATTAAGTTGCAAGCCAACCCAGATGACTCTAAAACAAGATTCGCAAACGTAATCTTGAATGGTATTGAAATCTTCAAGTTAAACGATACTAATGGAAATCTCGGTGGCCAAAATCCAGACCCACCTCCCAACACTCCGACTCAATCTCTTCCACCCTCGACCCCACAATCGAAGAGTCCATCAAATGCTAAAACGGTTGCAATTGTGGTACCCATCGTGGTTGGAAGCCTGATCGTCCTATTGGGTTTGGGTTTGTTTCTTTATCGGCGAAGGAAGACATTTACCGACCAAAATTCCAATGATGGAACTTCATGGTTGACTCCATTCACTACATCGACCGAAAAATCAAGCAAGACCCACAACTCAAATCTCCCCTCTGATCTATGCCGCTACTTTTCACTGACTGAGATCAAAGCAGCAACAAAAAACTTCGATGAACTTTTGATCATCGGCGTTGGCGGATTCGGAAACGTCTACAAAGGCTACATCGATGATGGAGCCACCCAAGTGGCGATTAAACGGTTGAAATCAGGGTCGAAACAGGGAGCACACGAGTTCAAAACAGAGATTGAGATGCTATCTCAACTTCGCCATCTCCATCTCGTCCCGCTTATTGGGTATTGCAATGATAGCCACGAAATGATTCTAGTCTATGAGTACATGTCTCACGGAACCCTCCGCAGCCACCTTTACGGCGACAACGAACAGCCTCTTCCATGGAAGCAACGCCTCCAGATATGCATCGGAGCTGCAAAAGGGCTCCACTACCTCCACACGGGAGCCAATAAAACAATCATCCACCGCGACGTCAAAACAACTAACATCTTACTTGATGAAAAATGGGTCGCGAAGGTTTCCGATTTCGGGCTTTCGAAAGAAGGGCCATCGAACGTGTCGAAAGCACACATCAGCACAGTAGTGAAAGGCAGCTTCGGGTACCTAGATCCAGAGTATTACCGACGTCAACAGCTAACTGAAAAATCCGATGTGTACTCATTCGGAGTTGTTCTTTGTGAGGTACTTTGCGGTCGTCCGCCGTTGATGCGCAACGCGGACAAGAACCAAGTGTCTCTTGCGGACTGGTTCCGACGATGCAACCGGAGCAACACGGTGTCTCAAATCATTGACCCACATGTAAGGAGCGAGATCTCGCCGGAGTGCTTGAGGAAATTCGTAGAGATGGCAGTGAGGTGCGTAGAAGATGAGGGGATAAAGCGGCCAGCGATGAAGGACGTGGTCTGGGGATTGGAGTTTGCGATGCAATTACAGAAGGGAGATGAAAATGATGATGTGGACGGCGGCGGCGGAAAGAAGGAGAGCGGCGGAGAAGAGTGGTTGGTGGACGAGGCGTTGTTCAGTAGCAGCGCTGATCAGAGACACGAGTCGGAGTCCGGGGTGAGCAGCTATGTGACCACGACAAGCAATAGTGACTACTCCACTTATTCGTACAATAAAAGCACATCCAACGTTTTCTCTGAGATTAAAGACCCCGCCGGAAGATGA 2658 48.76 MADCKPNPFVSFIFSFLILPVAVVSQAYTPTDNIVLDCGSPQNSTVPGDARPWLSDVNSKFFLSNQNDMSVIAQADPQSPPVPGPPYLTARLSRSAFTYSFPVSSGQKFIRLYFYSAPYPNFQRSQAVFSVTAGVHTLLRDFNASVNADASDHPEISREFCVFAEGNGEILNVTFTPTNGDSYAFVSGIEIVSMPPNLYYTEQGGTGLRFINRNNDFVAVDNRTSLEMVYRMNIGGNSISPSKDTGMFRTWSQESNLLPGMPGNSLPTNVSAAINYTKIQNYSAPEDVYRTARTMGPNSILNHLYNLTWEYPLDPGFPYMFRLHFCEFEVEINEAGDRVFLIYIGDAIAEDQFDVFPRAGGKDSPIYRDYAVFLSPSNQKKVNLSIKLQANPDDSKTRFANVILNGIEIFKLNDTNGNLGGQNPDPPPNTPTQSLPPSTPQSKSPSNAKTVAIVVPIVVGSLIVLLGLGLFLYRRRKTFTDQNSNDGTSWLTPFTTSTEKSSKTHNSNLPSDLCRYFSLTEIKAATKNFDELLIIGVGGFGNVYKGYIDDGATQVAIKRLKSGSKQGAHEFKTEIEMLSQLRHLHLVPLIGYCNDSHEMILVYEYMSHGTLRSHLYGDNEQPLPWKQRLQICIGAAKGLHYLHTGANKTIIHRDVKTTNILLDEKWVAKVSDFGLSKEGPSNVSKAHISTVVKGSFGYLDPEYYRRQQLTEKSDVYSFGVVLCEVLCGRPPLMRNADKNQVSLADWFRRCNRSNTVSQIIDPHVRSEISPECLRKFVEMAVRCVEDEGIKRPAMKDVVWGLEFAMQLQKGDENDDVDGGGGKKESGGEEWLVDEALFSSSADQRHESESGVSSYVTTTSNSDYSTYSYNKSTSNVFSEIKDPAGR 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9698807 9701837 + Sed0011692.1 Sed06g0860 717403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0860 885 FunFam FERONIA receptor-like kinase 224 413 - -
Sed06g0860 885 MobiDBLite consensus disorder prediction 842 869 - -
Sed06g0860 885 CDD TM_EGFR-like 446 477 - -
Sed06g0860 885 Pfam Protein tyrosine and serine/threonine kinase 535 798 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0860 885 CDD STKc_IRAK 535 798 - -
Sed06g0860 885 FunFam Receptor-like protein kinase FERONIA 501 605 - -
Sed06g0860 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0860 885 Gene3D - 33 194 - -
Sed06g0860 885 Gene3D - 224 413 - -
Sed06g0860 885 FunFam Receptor-like protein kinase FERONIA 606 819 - -
Sed06g0860 885 SMART serkin_6 529 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0860 885 MobiDBLite consensus disorder prediction 415 446 - -
Sed06g0860 885 Pfam Malectin-like domain 36 411 IPR024788 -
Sed06g0860 885 Gene3D Phosphorylase Kinase; domain 1 491 605 - -
Sed06g0860 885 ProSiteProfiles Protein kinase domain profile. 529 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0860 885 FunFam FERONIA receptor-like kinase 33 195 - -
Sed06g0860 885 SUPERFAMILY Protein kinase-like (PK-like) 503 804 IPR011009 -
Sed06g0860 885 ProSitePatterns Protein kinases ATP-binding region signature. 535 558 IPR017441 GO:0005524(InterPro)
Sed06g0860 885 MobiDBLite consensus disorder prediction 839 869 - -
Sed06g0860 885 PANTHER OS03G0124300 PROTEIN-RELATED 8 476 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Sed06g0860 885 Gene3D Transferase(Phosphotransferase) domain 1 606 819 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0265 Sed-Chr3:1608006 Sed06g0860 Sed-Chr6:9698807 1.10E-149 dispersed
Sed03g0266 Sed-Chr3:1612181 Sed06g0860 Sed-Chr6:9698807 3.60E-138 dispersed
Sed06g0860 Sed-Chr6:9698807 Sed06g0863 Sed-Chr6:9719740 0.00E+00 dispersed
Sed06g0860 Sed-Chr6:9698807 Sed06g0862 Sed-Chr6:9712294 2.1e-311 proximal
Sed06g0860 Sed-Chr6:9698807 Sed06g1451 Sed-Chr6:39303191 6.10E-295 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79352 PF12819 Malectin_like 5.00E-44 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0860 - - - 0.0