Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0869 ATGGCTGTTACCCTTTTCAGATTACCCTTTCTCCTTCCCCTTCTCGCCATTTTTCTTACTTTAACAGAAGCATATGATCCTCTTGATCCAAATGGAAACATTACTGTAAAATGGGATGTTATAAGCTGGACCGCCGATGGCTATGTTGCCGTTGTTACTATGTATAATTTCCAACAATATCGTCATATTCAAACACCGGGATGGTCTTTGCAATGGAAATGGGCAAAAAAAGAGGTCATATGGAGCATGTTGGGAGGCCAAGCAACAGAGCAAGGTGATTGCTCTAGATACAAAGGGAACATCCCCCATTCCTGCAAGAGGGATCCAACTATTGTCGATCTACTGCCCGGAACTCCATATAACCAGCAGATTGCAAATTGCTGCAAAGGCGGAGTTCTCAACTCGTGGGCGCAAGATCCAGTTACTGCAGTTAGCTCATTTCAGCTCAGTGTTGGTGCAGCTGGAACCTCAAATAAGACTGTCAAACTGCCGAAGAACTTCACCTTAAAAGCACCTGGGCCTGGCTATACTTGTGGACCTGCAAAAATTGTTAAACCGACCAAATTCATTTCCTCAGACAAACGGAGAGTCACACAAGCCTTGATGACATGGAACGTTACATGCTCATATTCACAATTTCTGGCCCAAAAAACTCCGACTTGCTGTGTCTCGCTTTCATCGTTTTACAACGACACAATTGTTTCTTGCCCTAAATGCTCTTGTGGCTGCCAATCCAACTTGAATGGAGCCCAAAGTTGTGTGGAGCCAAATTCTCCTCATTTAGCCTCTGTTATAACCAGTGCTAGTTCTAGCAAGAACAATTTGGCTCCTTTGGTCCAGTGTACCAGCCATATGTGTCCGATCCGAGTTCACTGGCATGTGAAAATAAACTATAGGGAGTACTGGCGTGTGAAGATCACAATTACAAATTTCAATTACATGATGAACTATACAAATTGGAACATGGTTGTTCAGCATCCTAACTTTGACAATCTAACGCAGATTTTCAGCTTCAACTACAAGCCAATCAACCCATACGGAACAATAAATGACACTGCAATCCTGTGGGGAGTCAAGTTCTACAATGATTTGCTCATGCAAGCAGGCCCTCTTGGGAATGTGCAGACCGAGCTACTTTTCCGAAAAGATCAATCGGCTTTCACATTTGATAAAGGCTGGGCCTTCCCTCGGAGGATCTATTTCAATGGCGACAGCTGTGTCATGCCGCCTCCAGAAGAGTATCCCTACTCACCAAACACGGGTTCGATGCAAGGCATCTCGTTGTTTACTACGCTATTGTTGGTTTCCCTTACTCTCTTGTCCTTTCATCATACAAGTGCATGA 1344 44.12 MAVTLFRLPFLLPLLAIFLTLTEAYDPLDPNGNITVKWDVISWTADGYVAVVTMYNFQQYRHIQTPGWSLQWKWAKKEVIWSMLGGQATEQGDCSRYKGNIPHSCKRDPTIVDLLPGTPYNQQIANCCKGGVLNSWAQDPVTAVSSFQLSVGAAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVKPTKFISSDKRRVTQALMTWNVTCSYSQFLAQKTPTCCVSLSSFYNDTIVSCPKCSCGCQSNLNGAQSCVEPNSPHLASVITSASSSKNNLAPLVQCTSHMCPIRVHWHVKINYREYWRVKITITNFNYMMNYTNWNMVVQHPNFDNLTQIFSFNYKPINPYGTINDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSAFTFDKGWAFPRRIYFNGDSCVMPPPEEYPYSPNTGSMQGISLFTTLLLVSLTLLSFHHTSA 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10099655 10103101 + Sed0012059.1 Sed06g0869 717412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0869 447 PIRSF COBRA 1 446 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Sed06g0869 447 PANTHER PROTEIN COBRA 14 435 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Sed06g0869 447 Pfam COBRA-like protein 48 211 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0869 Sed-Chr6:10099655 Sed12g2020 Sed-Chr12:31062518 8.50E-213 dispersed
Sed06g0869 Sed-Chr6:10099655 Sed06g0870 Sed-Chr6:10103328 6.80E-178 tandem
Sed12g2019 Sed-Chr12:31054307 Sed06g0869 Sed-Chr6:10099655 1.20E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0869 - - - 0.0