Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0870 ATGAGGTTGTTTGTTTCAGCTCTCTTCCTATTTATCATGTTTTCTCATGGAGCTGCCTACGATCCATTAGATCCAAATGGGAACATTACGATCAAATGGGATGTCATGTCTTGGACTGCTGATGGTTATGTGGCAGTGGTGACATTGAATAACTTTCAAATGTACCGCCACATTATGAGCCCCGGGTGGACAATGGGGTGGACATGGGCGAAAAAGGAAGTGATATGGTCGATGGTGGGATCGCAGACGACCGAGCAAGGGGACTGCTCCAAGTTCAAAGGAAACATTCCTCACTGTTGTAAGAAAACTCCCACTGTTGTGGATTTGATGCCTGGAGTTCCTTACAACCAACAGTTTGCAAACTGCTGCAGAGGTGGAGTTGTGGCTGCTTCGGGGCAAGATCCTGAAGCTGCTGTTTCAGCCTTTCAGATCAGTGTTGGCCAAGGAGGTACTACAAACAAGACTGTCAAGCTCCCCAAGAACTTCACTTTGCTCGGTCCTGGCCCCGGATACACTTGTGGCCCTGCAAAGATTGTGCCCTCCACCACTTTTCTCACACCCGACCGTCGCCGAAAAACACAAGCTTTGATGACATGGAATGTGACATGCACTTACTCTCAGTTTCTGGCTAGAAAGAATCCTAATTGCTGTGTTTCTTTCTCGTCTTTCTACAACGATACAATCACATCTTGTCCGTCTTGTTCTTGTGGTTGCCAAAACAAGAACAGCTGTGTCAAGAGTGATTCTAAGATTCTTAAGCTGGTTGGAATCAATACACCAAGGAAAGACAATGCCCAGTTGCTGCAATGCACACATCATATGTGCCCGGTTCGAGTTCACTGGCACGTGAAGCAAAATTACAAGGAATATTGGCGGGTGAAGATCGCCATCACAAACTTCAACTACCGGATGAACTACTCACTTTGGTCTCTCGTCGTCCAGCACCCGAATCTGAATAATGTAACCCAAGTTTTCAGCTTCGACTACAAACCCCTAGTTCCCTATGAATCAATCAATGACACGGGAATGTTTTATGGGATGAAGTTTTACAACGACCTACTGATGGAAGCAGGGCCATTTGGGAATGTACAGTCAGAAGTGTTGCTGCAAAAGGACCGGAACACCTTCACCTTCAAGCAGGGATGGGCGTTCCCTCGGAAAGTTTACTTCAATGGCGACGAGTGCATGCTTCCGCCACCCGACACATACCCGTTCCTCCCGAACACGGCCCACAAAAGGCCCATTGCCGTCTCAACTTTGATTGCTTTGCTGCTAATCTTCCTACTGCTAGCTATTTGCTGA 1302 47.24 MRLFVSALFLFIMFSHGAAYDPLDPNGNITIKWDVMSWTADGYVAVVTLNNFQMYRHIMSPGWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKTPTVVDLMPGVPYNQQFANCCRGGVVAASGQDPEAAVSAFQISVGQGGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCSCGCQNKNSCVKSDSKILKLVGINTPRKDNAQLLQCTHHMCPVRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDRNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNTAHKRPIAVSTLIALLLIFLLLAIC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10103328 10105517 - Sed0022913.1 Sed06g0870 717413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0870 433 PIRSF COBRA 1 433 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Sed06g0870 433 PANTHER PROTEIN COBRA 5 426 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Sed06g0870 433 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0870 Sed-Chr6:10103328 Sed08g0289 Sed-Chr8:1710521 5.90E-219 dispersed
Sed06g0869 Sed-Chr6:10099655 Sed06g0870 Sed-Chr6:10103328 6.80E-178 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0870 - - - 0.0