Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0875 ATGGGGAGAGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAAATAAACAGGCAGGTCACATTTGCAAAGAGAAGAAATGGGCTCTTGAAGAAGGCTTATGAGCTTTCTGTGCTTTGTGAGGCTGAAGTGGCTCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTTTGTAGCTCTTCCAACATGCTCCAAACGCTAGAAAGGTACCAGAAATGCAGTTATGGAGCGGTGGAGGTTGCCAAACCAGCCAAAGAGCTCGAGAGTAGCTATAGAGAATACTTGAAGGTGAAGGCTAGGTACGAGTCTCTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAACGTCAGCTTGAGTCTTCTTTGAAGCTTGTTAGGTCTACTAAGACTCAGTACATGCTGGACCAGCTTTCTGATCTTCAGAACAAGGAACATATGCTGGTTGAAACCAACAGAGCTCTGGCATTAAAGTTGGAAGAAATAAGTTCAAGAAACAACATAAGGCTAACATGGGAAAATGGAGACCAAAGCATGTCTTATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCCCTAGATTGCAACCCCACTTTGCAAATTGGGTACTCTGCTGCAGTTTCAGATCAAATTACAGACAACAGTGCCCCAAATCATGGCCAACAAGTCCATGGCTTTCTCCCTGGTTGGATGCTTTGA 741 44.8 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCSSSNMLQTLERYQKCSYGAVEVAKPAKELESSYREYLKVKARYESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKLVRSTKTQYMLDQLSDLQNKEHMLVETNRALALKLEEISSRNNIRLTWENGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYSAAVSDQITDNSAPNHGQQVHGFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10318157 10327488 + Sed0026823.1 Sed06g0875 717418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0875 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0875 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g0875 246 Pfam K-box region 84 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g0875 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed06g0875 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0875 246 FunFam MADS-box transcription factor 1 13 87 - -
Sed06g0875 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0875 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0875 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0875 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0875 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0875 246 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0875 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed06g0875 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0875 246 Coils Coil 124 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2283 Sed-Chr1:17245779 Sed06g0875 Sed-Chr6:10318157 7.90E-70 dispersed
Sed06g0875 Sed-Chr6:10318157 Sed07g0090 Sed-Chr7:917278 1.50E-78 dispersed
Sed06g0875 Sed-Chr6:10318157 Sed06g0876 Sed-Chr6:10454035 3.30E-41 tandem
Sed01g2282 Sed-Chr1:17231695 Sed06g0875 Sed-Chr6:10318157 1.80E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38845 PF01486 K-box 1.60E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0875 K09264 - csv:101208204 439.884