Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0876 ATGGGAAGAGGGAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGTCGCCAAGTCACCTTCTCTAAGCGTAGAGCTGGTTTGCTCAAAAAGGCTCACGAGATCTCTGTTCTTTGTGAAGCTGATGTTGCTTTGATTGTCTTCTCCACCAAAGGAAAGCTCTTCGAGTTCTCCTCCCATTCAAGCATGGAGAAGATCTTAGAAAAGTATGAGAGATATTCTTTTGCAGAGAAGCCATTGGCCACAAATGCAGAGTCTGAATCACAGGTAAGTTGGTGTCAGGAGTACCCAAGACTTGCAGCCAGATCGGAAATTGTAGAGAAGAATATAAGGCATTATTTGGGAGAAGAACTTGAACCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATTCATCACTCAAGCGCATAAGAGCTAAAAAGAACCAACTAATGCAAGAATCCATTTCAATGCAACACAAAAAGGAAAGGGATTTGCAAGAGGAGAACAGGCAACTAGCAAATAAGATAAAGGAGAATGAGAAAGTTTTGGTTGAACGTGGGCACTGTGAGCTCCCAAACGTGGTTCATAATAAGCCAATTTTTACAATGCAGCCATCAATTCCTTCTTTATCCATTGGAGTAAACTTGCATGATGGGAGAGGATCAGATGAAGATGAAACAAGGCCAACAAGCACCAACATCCAAATACCAACTTGGATGCTTAACCATGTGACTGAAAATCCTCCCAGTTAA 744 41.4 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEFSSHSSMEKILEKYERYSFAEKPLATNAESESQVSWCQEYPRLAARSEIVEKNIRHYLGEELEPLNLRELQSLEQQLDSSLKRIRAKKNQLMQESISMQHKKERDLQEENRQLANKIKENEKVLVERGHCELPNVVHNKPIFTMQPSIPSLSIGVNLHDGRGSDEDETRPTSTNIQIPTWMLNHVTENPPS 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10454035 10463989 + Sed0012551.1 Sed06g0876 717419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0876 247 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed06g0876 247 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0876 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0876 247 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g0876 247 Gene3D - 13 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0876 247 Pfam K-box region 85 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g0876 247 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0876 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0876 247 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Sed06g0876 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0876 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 200 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed06g0876 247 Coils Coil 155 182 - -
Sed06g0876 247 Coils Coil 123 150 - -
Sed06g0876 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0876 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0876 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0876 Sed-Chr6:10454035 Sed08g2135 Sed-Chr8:35345567 1.40E-60 dispersed
Sed06g0875 Sed-Chr6:10318157 Sed06g0876 Sed-Chr6:10454035 3.30E-41 tandem
Sed06g0876 Sed-Chr6:10454035 Sed06g0877 Sed-Chr6:10454035 2.40E-79 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38846 PF01486 K-box 5.40E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0876 K09264 - csv:101218674 387.882