Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0877 ATGGGAAGAGGGAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGTCGCCAAGTCACCTTCTCTAAGCGTAGAGCTGGTTTGCTCAAAAAGGCTCACGAGATCTCTGTTCTTTGTGAAGCTGATGTTGCTTTGATTGTCTTCTCCACCAAAGGAAAGCTCTTCGAGTTCTCCTCCCATTCAAGCATGGAGAAGATCTTAGAAAAGTATGAGAGATATTCTTTTGCAGAGAAGCCATTGGCCACAAATGCAGAGTCTGAATCACAGGTAAGTTGGTGTCAGGAGTACCCAAGACTTGCAGCCAGATCGGAAATTGTAGAGAAGAATATAAGGCATTATTTGGGAGAAGAACTTGAACCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATTCATCACTCAAGCGCATAAGAGCTAAAAAGAACCAACTAATGCAAGAATCCATTTCAATGCAACACAAAAAGGTGAACAAATTTTTAGCAATATATTTTGTATCATTACTAATGCATATATGA 525 39.62 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEFSSHSSMEKILEKYERYSFAEKPLATNAESESQVSWCQEYPRLAARSEIVEKNIRHYLGEELEPLNLRELQSLEQQLDSSLKRIRAKKNQLMQESISMQHKKVNKFLAIYFVSLLMHI 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10454035 10463989 + Sed0012551.2 Sed06g0877 717420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0877 174 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed06g0877 174 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0877 174 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0877 174 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0877 174 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0877 174 ProSiteProfiles K-box domain profile. 89 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g0877 174 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Sed06g0877 174 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0877 174 Pfam K-box region 85 161 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g0877 174 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0877 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0877 174 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 156 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed06g0877 174 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed06g0877 174 Coils Coil 123 150 - -
Sed06g0877 174 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0877 Sed-Chr6:10454035 Sed08g2135 Sed-Chr8:35345567 3.80E-52 dispersed
Sed06g0876 Sed-Chr6:10454035 Sed06g0877 Sed-Chr6:10454035 2.40E-79 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38847 PF01486 K-box 3.00E-22 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0877 K09264 - csv:101218674 261.151