Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0897 ATGACGATCGATAATTTTGTGCCAAAGGGGGAGAAGAGGTCAAGCAGGAAGAAACCTGTAGTGGATGAGAAATCTCCTTTGTTACCAAGTAAACATGATGAAGGTTCTGGGCATAGTGAATTCAATGGAGCTTCCTTTAGTGGGGCAGTGTTCAATTTATCCACCACAATTATTGGTGCTGGGATCATGTCCTTGCCTGCTATGGTGAAAGAGTTGGGCCTATGTTTAGGGGTTGCCATGATCATCTTCATGGCTTTCCTTACAGAGGCTTCCATAGAGCTCCTGCTCCGGTTTAGCCGGCCGCAGAAATCGGCTTCTTATGGAGGTTTAATGGGAGATGCTTTTGGGAAATATGGCAAAATGGTGTTGCAGATATGTGTTCTTGTCAACAACATTGGTGTTCTTACTGTCTACATGATTATTATAGGTGATGTGCTTTCTGGAACCACCGAAGGTGGTGCTCATCATGCCGGTGTTTTAGAAGGATGGTTTGGACAATATTGGTGGAATGGTCGATTTTTCGTACTTCTAGTTACGACGCTTGGAATCTTTGCACCATTGGCATGCTTTAAGCGAATAGATTCATTGAGCTTTACATCAGCTTTATCAGTTGCACTGGCTGTGGTATTTCTTTTCATTACCATCGGAATTTCAGTTTACAAGTTGATAGATGGAACCATTGAGATGCCGAGATTGCTCCCTGAGATCATCGACGTGCCATCATTCTTGAAGCTGTTTACGGCTGTCCCTATTGTGGTTACTGCATATGTATGCCATTACAATGTTCACAACATAAGCAATGAACTTGAGGATTCTTCACAGACAAGATCAGTCGTTCGAACTGCAATTGGTCTGTGCTCTTCTGTATATGTTATGACCAGCATTTTTGGTTACCTCCTTTTTGGTGAAAAAACTCTCTCAGATGTACTTGCAAACTTTGATGCTGACCTCGGCATTCCCTATGGTTCTGCATTTAACGATGCTGTTCGTGTTAGCTATGCGGCACACCTGATGCTTGTATTCCCAATTGTCTTTTACCCTTTGAGGGTTAACTTTGATGGCCTCCTCTTTCCATCAGCTCGACCATTGGTTCGAGACAATTGGAGATTTTCGCTGATCACAGTCTTGCTTATTTCTCTCATTTTTTTGGGAGCAAATTTCATTCCTAGCATCTGGGATGCCTTCCAATTTACAGGTGCAACTGCTGCTGTGTGCATTGGATTCATATTCCCTGCTTCTGTGGCTTTGAGAGATTCACACAATATAGCGACGAAAAAGGACAAGGTGTTGGGTGTTTTCATGGTTGTTCTCGCCGTTTTCTCGAACATAATTGCCATATACAGCGATGCCTATGCTTTGTTCAAAAGGAACTCCTCACCCCGAGACTGA 1389 43.2 MTIDNFVPKGEKRSSRKKPVVDEKSPLLPSKHDEGSGHSEFNGASFSGAVFNLSTTIIGAGIMSLPAMVKELGLCLGVAMIIFMAFLTEASIELLLRFSRPQKSASYGGLMGDAFGKYGKMVLQICVLVNNIGVLTVYMIIIGDVLSGTTEGGAHHAGVLEGWFGQYWWNGRFFVLLVTTLGIFAPLACFKRIDSLSFTSALSVALAVVFLFITIGISVYKLIDGTIEMPRLLPEIIDVPSFLKLFTAVPIVVTAYVCHYNVHNISNELEDSSQTRSVVRTAIGLCSSVYVMTSIFGYLLFGEKTLSDVLANFDADLGIPYGSAFNDAVRVSYAAHLMLVFPIVFYPLRVNFDGLLFPSARPLVRDNWRFSLITVLLISLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPASVALRDSHNIATKKDKVLGVFMVVLAVFSNIIAIYSDAYALFKRNSSPRD 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10908320 10912992 - Sed0012305.1 Sed06g0897 717440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0897 462 PANTHER AMINO ACID TRANSPORTER 42 444 - GO:0003333(PANTHER)|GO:0015179(PANTHER)
Sed06g0897 462 Pfam Transmembrane amino acid transporter protein 44 448 IPR013057 -
Sed06g0897 462 MobiDBLite consensus disorder prediction 1 38 - -
Sed06g0897 462 MobiDBLite consensus disorder prediction 9 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0897 K14207 - - csv:101207698 804.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2942 Sed-Chr4:40959666 Sed06g0897 Sed-Chr6:10908320 1.10E-80 dispersed
Sed06g0897 Sed-Chr6:10908320 Sed13g1836 Sed-Chr13:23275961 1.90E-138 dispersed
Sed06g0897 Sed-Chr6:10908320 Sed04g2941 Sed-Chr4:40959666 1.50E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2905 . 98 460 Amino Acid/Auxin Permease AAAP Family AT5G02170 52.9 6.5e-102 369.0
Sed12g1157 . 66 429 Amino Acid/Auxin Permease AAAP Family AT2G41190 67.7 3.5e-138 489.6
Sed02g0805 . 71 437 Amino Acid/Auxin Permease AAAP Family AT2G41190 54.4 1.5e-112 404.4
Sed01g2905 . 105 429 Amino Acid/Auxin Permease AAAP Family AT2G41190 52.0 1.8e-94 344.4
Sed06g0897 . 22 462 Amino Acid/Auxin Permease AAAP Family AT3G30390 69.8 5.8e-172 601.7
Sed13g1836 . 18 444 Amino Acid/Auxin Permease AAAP Family AT3G30390 59.2 9.0e-141 498.0
Sed06g0630 . 29 432 Amino Acid/Auxin Permease AAAP Family AT3G28960 57.8 4.4e-131 465.7
Sed06g0897 . 20 458 Amino Acid/Auxin Permease AAAP Family AT5G38820 66.0 5.4e-162 568.5
Sed13g1836 . 18 444 Amino Acid/Auxin Permease AAAP Family AT5G38820 57.5 1.9e-138 490.3
Sed09g1476 . 3 484 Amino Acid/Auxin Permease AAAP Family AT1G80510 69.4 1.6e-180 630.2
Sed07g0758 . 3 476 Amino Acid/Auxin Permease AAAP Family AT1G80510 69.8 7.7e-175 611.3
Sed07g2249 . 53 557 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.4 2.8e-133 473.4
Sed03g0640 . 32 549 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.7 1.1e-132 471.5
Sed01g2905 . 37 490 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.5 1.6e-120 431.0
Sed01g2905 . 102 490 Amino Acid/Auxin Permease AAAP Family AT3G09330 54.1 6.9e-113 405.6
Sed01g2905 . 102 490 Amino Acid/Auxin Permease AAAP Family AT3G09340 53.8 1.1e-113 408.3
Sed07g2249 . 39 490 Amino Acid/Auxin Permease AAAP Family AT2G39130 70.6 7.6e-178 621.3
Sed03g0640 . 1 482 Amino Acid/Auxin Permease AAAP Family AT2G39130 65.4 1.7e-174 610.1
Sed01g2905 . 1 424 Amino Acid/Auxin Permease AAAP Family AT2G39130 64.6 2.7e-151 533.1
Sed06g0630 . 99 432 Amino Acid/Auxin Permease AAAP Family AT5G15240 61.3 2.4e-111 399.8
Sed04g0357 . 10 426 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.1 8.5e-133 471.5
Sed04g2943 . 22 432 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.0 2.3e-130 463.4
Sed04g2941 . 5 436 Amino Acid/Auxin Permease AAAP Family AT3G56200 57.2 3.3e-129 459.5
Sed04g2942 . 5 384 Amino Acid/Auxin Permease AAAP Family AT3G56200 50.3 4.1e-103 372.9
Sed03g0640 . 1 496 Amino Acid/Auxin Permease AAAP Family AT3G54830 61.9 3.3e-166 582.8
Sed07g2249 . 44 504 Amino Acid/Auxin Permease AAAP Family AT3G54830 65.0 1.8e-164 577.0
Sed01g2905 . 1 438 Amino Acid/Auxin Permease AAAP Family AT3G54830 61.6 6.9e-148 521.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006417 3 1 2 2 2 1 1 0 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 2 1 1 1 0 1 38