Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0902 ATGCCATCGGCTCAAGATCCATTCTATGTTGTAAAAGACGAGATTCAAGAATCTATCGATAAGCTGCAATTCAGCTTTCACCAATGGGAAAGGATATCTTCCAATCCAGGAGAGAGAGTACAACTTAAGAAAGAGGTGCTTGCTGCCTGTGAGAGCATTGAATGGCAGGTGGATGAATTAGATAAAGCTATTTCTGTGGCGGCTAGAGATCCTTCGTTGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACGGCTAGAACACAGGTTGGAAATGTTAAGAGAGTAGTGGGAGCTGGAAAAGAGCAAACTGGACCTGCTAGTGCAAATGGGATGCGTCGAGAATTGATGCGACTACCTGATGCACATGAAACAGACAGATCAAATGTATATACAGCACACCAATCAAATGATGACTTCATCTCGTCGGAATCAGATAGACAGTTGCTTCTCATAAGGCAGCAGGACGAGGAGTTGGATGAGCTGAGCGCAAGCGTGCAGAGAATTGGAGGCGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGATAAAATCATGGAGGATCTAGGAATGGAAATGGACAGTACATCGAATCGTCTTGATTTTGTTCAGAAAAAAGTAGGCATGGTAATGAAGAAAGCGAGCGCCAAGGGGCAGTTGGTGATGATACTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTATTGGTGTTCCTCACCTAG 741 44.4 MPSAQDPFYVVKDEIQESIDKLQFSFHQWERISSNPGERVQLKKEVLAACESIEWQVDELDKAISVAARDPSLYGIDDAELEKRRRWTSTARTQVGNVKRVVGAGKEQTGPASANGMRRELMRLPDAHETDRSNVYTAHQSNDDFISSESDRQLLLIRQQDEELDELSASVQRIGGVGLTIHEELLAQDKIMEDLGMEMDSTSNRLDFVQKKVGMVMKKASAKGQLVMILFLVALFIILFVLVFLT 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11026636 11039597 - Sed0001901.1 Sed06g0902 717445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0902 246 PANTHER SYNTAXIN 11 230 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed06g0902 246 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Sed06g0902 246 FunFam Syntaxin 10 3 105 - -
Sed06g0902 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Sed06g0902 246 FunFam syntaxin-61 isoform X1 157 218 - -
Sed06g0902 246 SUPERFAMILY SNARE fusion complex 153 216 - -
Sed06g0902 246 Pfam SNARE domain 191 242 IPR000727 -
Sed06g0902 246 SMART tSNARE_6 149 216 IPR000727 -
Sed06g0902 246 Gene3D - 2 104 - -
Sed06g0902 246 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed06g0902 246 Pfam Syntaxin 6, N-terminal 6 99 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Sed06g0902 246 CDD SNARE_Qc 157 213 - -
Sed06g0902 246 Gene3D - 161 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0902 Sed-Chr6:11026636 Sed10g1783 Sed-Chr10:34904962 1.60E-115 dispersed
Sed06g0902 Sed-Chr6:11026636 Sed06g0903 Sed-Chr6:11026636 1.00E-130 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0902 K08500 - csv:101212527 398.282