Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0902 | ATGCCATCGGCTCAAGATCCATTCTATGTTGTAAAAGACGAGATTCAAGAATCTATCGATAAGCTGCAATTCAGCTTTCACCAATGGGAAAGGATATCTTCCAATCCAGGAGAGAGAGTACAACTTAAGAAAGAGGTGCTTGCTGCCTGTGAGAGCATTGAATGGCAGGTGGATGAATTAGATAAAGCTATTTCTGTGGCGGCTAGAGATCCTTCGTTGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACGGCTAGAACACAGGTTGGAAATGTTAAGAGAGTAGTGGGAGCTGGAAAAGAGCAAACTGGACCTGCTAGTGCAAATGGGATGCGTCGAGAATTGATGCGACTACCTGATGCACATGAAACAGACAGATCAAATGTATATACAGCACACCAATCAAATGATGACTTCATCTCGTCGGAATCAGATAGACAGTTGCTTCTCATAAGGCAGCAGGACGAGGAGTTGGATGAGCTGAGCGCAAGCGTGCAGAGAATTGGAGGCGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGATAAAATCATGGAGGATCTAGGAATGGAAATGGACAGTACATCGAATCGTCTTGATTTTGTTCAGAAAAAAGTAGGCATGGTAATGAAGAAAGCGAGCGCCAAGGGGCAGTTGGTGATGATACTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTATTGGTGTTCCTCACCTAG | 741 | 44.4 | MPSAQDPFYVVKDEIQESIDKLQFSFHQWERISSNPGERVQLKKEVLAACESIEWQVDELDKAISVAARDPSLYGIDDAELEKRRRWTSTARTQVGNVKRVVGAGKEQTGPASANGMRRELMRLPDAHETDRSNVYTAHQSNDDFISSESDRQLLLIRQQDEELDELSASVQRIGGVGLTIHEELLAQDKIMEDLGMEMDSTSNRLDFVQKKVGMVMKKASAKGQLVMILFLVALFIILFVLVFLT | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11026636 | 11039597 | - | Sed0001901.1 | Sed06g0902 | 717445 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0902 | 246 | PANTHER | SYNTAXIN | 11 | 230 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Sed06g0902 | 246 | CDD | SNARE_NTD_AtSYP61-like | 5 | 102 | - | - | |
Sed06g0902 | 246 | FunFam | Syntaxin 10 | 3 | 105 | - | - | |
Sed06g0902 | 246 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 154 | 216 | IPR000727 | - | |
Sed06g0902 | 246 | FunFam | syntaxin-61 isoform X1 | 157 | 218 | - | - | |
Sed06g0902 | 246 | SUPERFAMILY | SNARE fusion complex | 153 | 216 | - | - | |
Sed06g0902 | 246 | Pfam | SNARE domain | 191 | 242 | IPR000727 | - | |
Sed06g0902 | 246 | SMART | tSNARE_6 | 149 | 216 | IPR000727 | - | |
Sed06g0902 | 246 | Gene3D | - | 2 | 104 | - | - | |
Sed06g0902 | 246 | SUPERFAMILY | t-snare proteins | 5 | 100 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Sed06g0902 | 246 | Pfam | Syntaxin 6, N-terminal | 6 | 99 | IPR015260 | GO:0016020(InterPro)|GO:0048193(InterPro) | |
Sed06g0902 | 246 | CDD | SNARE_Qc | 157 | 213 | - | - | |
Sed06g0902 | 246 | Gene3D | - | 161 | 225 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0902 | Sed-Chr6:11026636 | Sed10g1783 | Sed-Chr10:34904962 | 1.60E-115 | dispersed | |
Sed06g0902 | Sed-Chr6:11026636 | Sed06g0903 | Sed-Chr6:11026636 | 1.00E-130 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0902 | K08500 | - | csv:101212527 | 398.282 |