Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0944 ATGAGCGGGCGGATCGTGAGCGAGTCGGAGTCGAGCATAGTGCCACGGTCGAAGGTGGGCGTGGAACCGAAGAAGAAGGTGTGGGAGGAGTTCAGGTCCGTGGTGAGCGAAACGTTCTTTGCGGATCAGCCTCTTCGGGCATTCAAAGATCAATCAAAGCGCAGGAAGGCTGCACTTTTCGTGCAAGGCCTGTTCCCCATATTCCAATGGGGAAAGGGATACAATTTCAGTAAGTTCAAAGGGGACTTCATCGCTGGCCTCACCATTGCCAGTCTTTGCATTCCTCAAGATATTGGATATGCCAAGCTCGCCAATTTGCCTGTTGAAAATGGACTTTACACTAGCTTCGTGCCACCACTGGTATACGCAGTAATGGGGAGCTCTAGGGATATCGCGATTGGGCCGGTCGCCGTGGTGTCGCTTTTGCTGGGAACGCTTCTCCAGCAGGAGTACGACCCGGTGAAGGAAGCCGAGAACTACAAGCGCCTGGCTTTCACCGCCACTTTCTTTGCCGGAGTGACTCAGTTAGCTCTTGGCTTCCTCCGCTTGGGCTTCTTGATCGACTTTCTTTCTCACGCTGCAATTGTCGGCTTTATGGCCGGCGCCGCCGTCACCATCGCCCTTCAGCAACTCAAAGGTCTGCTTGGCATAATAAGCTTCACTAAGAAAACTGATATCGTTTCTGTCATGCGCTCTGTTTGGAGTAATGTGCACCATGGGTGGAACTGGCAGACTATACTCATCGGCATTTCATTTTTGGCCTTTCTTCTTGCTACCAAATACATAGGAAAGAAGAATAAGAAACTCTTTTGGATACCTGCAATGGCCCCTTTAATATCCGTGATACTATCGACATTTTGTGTCTACATTACTCGAGCAGATAAACATGGAGTTATAATTGTAAGAAGCATAAAGCAAGGAATAAATCCGTCATCCCTTGATGAAATATTCTTCCATGGAGACAATGTCGCAAAAGGTTTCAAGATTGGAGTGATTGCTGGTTTGATTGGCCTCACGGAAGCTGTGGCCATTGCAAGAACATTTGCAGACCTAAAGGACTACGAAATTGATGGTAACAAAGAAATGATGGCTCTTGGAACAATGAACATTGCTGGTTCCATGACTTCTTGCTATGTAGCCACAGGATCATTCTCCCGGTCGGCGGTGAATTTCATGGCTGGTTGCAGCACACCGGTGTCGAACATCGTCATGGCATGTGTTGTTCTCCTCACCTTAGAGCTGATCACTCCACTTTTCAAGTACACCCCCAACGCCATTCTCGCATCCATCATCATCTGCGCCGTCATCGGTCTCATCGACATTGATGCCATGATTCTGCTATGGAAGATCGACAAATTCGACTTCATTGCATGCATGGGGGCTTTTTTCGGTGTTGTCTTTCATTCTGTTGAGATTGGCCTTCTCATAGCTGTTAGTCTGTCGTTGTTCAAAATCTTGTTGCAAGTGACGAGACCGCGCATTGCGTTGCTCGGAAAGCTGCCAATGATCCCCATTTTTAGAAACATTTCGCAGTACCCCGGAGCGAAGAGGATAGAAGGAGTTCTAGTCGTTAGGGTTGACTCTTCAGTATACTTCTCTAATGCCAACTATGTCAAAGAAAGGATATTGAGATGGCTAGCAGATGAAACAAAGGAGTTAGGAGATAAATCTTTGCCAATCAAGTTCGTGATCGTCGACATGTCTCCTGTATCCGATATCGACACGAGCGGCATCCACGCTTTGGAGGGATTGCACAATCATTTGCGGAAGAAGGAAATCGAACTTGCACTTGCAAATCCAGGGCCAGTGATCATGGAGAAACTCTTGGCTGCAGAGTTTGAGAAGGTCATTGGAGAACAAAACATTTTCCTTAGTGTCAACGAAGCTATCAAGACTTGTGCCCCAACTGCAAATCTTGATCCTTGA 1926 47.4 MSGRIVSESESSIVPRSKVGVEPKKKVWEEFRSVVSETFFADQPLRAFKDQSKRRKAALFVQGLFPIFQWGKGYNFSKFKGDFIAGLTIASLCIPQDIGYAKLANLPVENGLYTSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLQQEYDPVKEAENYKRLAFTATFFAGVTQLALGFLRLGFLIDFLSHAAIVGFMAGAAVTIALQQLKGLLGIISFTKKTDIVSVMRSVWSNVHHGWNWQTILIGISFLAFLLATKYIGKKNKKLFWIPAMAPLISVILSTFCVYITRADKHGVIIVRSIKQGINPSSLDEIFFHGDNVAKGFKIGVIAGLIGLTEAVAIARTFADLKDYEIDGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNFMAGCSTPVSNIVMACVVLLTLELITPLFKYTPNAILASIIICAVIGLIDIDAMILLWKIDKFDFIACMGAFFGVVFHSVEIGLLIAVSLSLFKILLQVTRPRIALLGKLPMIPIFRNISQYPGAKRIEGVLVVRVDSSVYFSNANYVKERILRWLADETKELGDKSLPIKFVIVDMSPVSDIDTSGIHALEGLHNHLRKKEIELALANPGPVIMEKLLAAEFEKVIGEQNIFLSVNEAIKTCAPTANLDP 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12421202 12428111 - Sed0012674.1 Sed06g0944 717487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0944 641 ProSiteProfiles STAS domain profile. 511 633 IPR002645 -
Sed06g0944 641 Pfam STAS domain 513 629 IPR002645 -
Sed06g0944 641 Pfam Sulfate permease family 79 460 IPR011547 GO:0016020(InterPro)
Sed06g0944 641 PANTHER SULFATE TRANSPORTER 40 633 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0944 641 FunFam Sulfate transporter 31 491 636 - -
Sed06g0944 641 Gene3D STAS domain 506 637 IPR036513 -
Sed06g0944 641 NCBIfam sulfate permease 66 629 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0944 641 SUPERFAMILY SpoIIaa-like 516 633 IPR036513 -
Sed06g0944 641 CDD STAS_SulP_like_sulfate_transporter 512 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0944 Sed-Chr6:12421202 Sed12g1415 Sed-Chr12:11758550 1.00E-243 dispersed
Sed06g0944 Sed-Chr6:12421202 Sed06g0945 Sed-Chr6:12433428 1.40E-70 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0944 K17470 - csv:101202746 1101.66