Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0965 ATGGGGGACCGTGGATCTTACGGCTTGGCTCCTCGTCTGGATATTGACCAGTTATTGTTAGAAGCAAAACATCGTTGGTTACGGCCAGCTGAAATTTGTGAAATACTCCGGAACTATCCTAAGTTTCATATTTCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGAAAGAAGAAAGACGGAAAAACTGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCACGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAATTAAGGGTAATAGAACAAATATTGGAGCTGTTGTTGAGACTGATGAGATTTTATCAAGTTCACAGAAGAGCAGTCCTACGAGTTCTAGTTATTCCAGCAGCCAGAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACCAGCACTTTGACATCATTTTGTGAAGATGCTGATACTGAAGATACTTACCAAGCAACCTCAAGATTTCACTCTTTCCCCACGTCACCAAATTTGGGCAATGGTCTTCTGGTGAATAAAAGAGATGCTGGTCTATCAAAATTTTCTTTTCCGCATTCATCTTCTGATAATATTGAAGCTTGGTCATCAGTTCCTCCTGTGGAATATATATCACAAGTTCAGAAAGATGGACTTGGGAGTAGTGAGGGTAGTACTGGTGTGATTGGTTATCAGAAGACACTCAGCTCTGCCTCATGGGAAGAGATCTTGCAACAATGTACAAGTGGATTTCAAACTGTACCGTCTCATGTCTTAAACTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAACTCATGGCAAGCTTTTAGCGAATAACAGTGCTTTTAAAGAGGACTTTGGGAGCTCTCTGACAATGGCATCAAATTGGCAGGTTCCTCTTGAAGACAATACTTTGTCCTTTTCAAAAGGGCACGTTGACCAGTTCCCAGATTTATATTCAGTTTATGACATAGATGGTAGGTTAACTGATCAGAAATCTCACAACGCAACTTTTGGACGTGGCCATGAGATGTTTTCTGCTCATCCTGGCATAGGGAATGAGGAGATTTTGTCAAGCAACCTCGAATTACAGTTCAATGAAGGAGAATTGTATTCTGCAATGAAGTCAAGTTCTGAAAATGATATGTCCAAAGAAGGTGCCATCAGCTATTCCTTGACTTTGAAACAATCATTAATGGATGAAGAGGAGAGTTTGAAGAAAGTTGACAGCTTCTCACGGTGGGTATCTAGAGAACTTGTGGAAGTTGATGATTTGCACATGCATCCATCGTCTGGTTTGTCTTGGAGCACTGTAGAATGTGGTGACATGGTGAATGATTCATCATTAAGCCCCTCTCTTTCTGAAGACCAGCTTTTCAGTATAACGGACTTTTCTCCAAAGTGGACACTTCCAGATTTAGAAACTGAGGTTGTGATTATAGGTAAGTTTCTGGGGAACAATCATGGCACAAAATGTTACTGGTCATGTATGTTTGGAGAAGTCGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTGTGCTGTCACGCACCGCCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGTGAGGTGCGTGAGTTTGATTACATGGCAGGCTCTGCTCAAGATGCCAATGTTACCGATGTGTATGCTGTTGGTGCTACAGAAGAATTACATATGCATTTTCGATTTGAGAGTTTACTGTCCCTTACATCTTCAAATCCTCCAAATAATCTCTCTGAAGGTGCCTTGGAGAAGCAGAACTTAATCAGAAAGCTTATCTCAATAAAAGAGGAAGAAGATTGTTATGGGGAAGAGCCAAAATCTCAAAATGTTCAAATTCAGCATCAAAGCAAGGAGGCAATTTTTGTAAAGCTGATGAAAGAAAAGCTGTATTCGTGGCTTATCCGGAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGGCAGGGGGTAATTCATCTAGCAGCAGCCCTTGGTTATGATTGGGCAATCAGGCCAATTGTAGCTGCAGGAGTGAGTATAAACTTTAGAGACGTTAATGGATGGACTGCTCTTCATTGGGCAGCCTTATGTGGCAGAGAGTTGACAGTCGGAACCCTTGTAACTTTGGGTGCTGCTCCGGGATTGCCGGCAGATCCATCTCCAGGAAATCCTTTGGGCATAATGCCTGCAGAGCTTGCTTCTATAAATGGACACAAAGGGATCTCTGGTTTTCTAGGAGAGTCATCATTGACCAGTTTTCTCTCATCAGTATCGATATCTGATACCAAAGAAGATGGTGTGCTAGACGCTTCAAAAGAGAAAGCTATATATACTGTTACGGAACGGAAGGCCACACCGATAAATGATGGCTTTATGCCTGGTGATTTGTCTTTGAAGGATTCAATAACTGCTGTTTGCAATGCTACTCAAGCTGCTGACCGTATACATCTGATGTTTAGAAGGATGTCATTTCAGAGGAAACAATTATCAGAGCATCCTGATGAATTTGGGTCCTCAGATGATAGTGCTATTTCATTTGTCACTGCCAGGGCACGTAAGTCTGGACTAAGTAACAACCCTGCTCAGGCTGCTGCAGTTCGCATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTGAGAGGACACCAGGTGAGGAAGCAATATAGAAAGATCGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGACCAGATACAGCTGCCAAGGATCCAGCCGCGGTGATGGAACCACCTAAAGAGGACGATTATGATTTTTTGAAGGAAGGAAGGAGGCAGACGGAGGAGAGATTTCAAAAAGCACTTACTAGGGTCAAGTCCATGGCTCAGTATCCTGAGGGACGAGATCAATACCGTAGGCTACTTACAGTGGTTCAAAAGTGCCGCGAAACTAAGGTGAGTAATATGGCTATTGCTAGTAGTTCAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCTCTGCTGGACGATGATGCTTTGATGTCTATGACATTTGATTGA 3282 42.35 MGDRGSYGLAPRLDIDQLLLEAKHRWLRPAEICEILRNYPKFHISSEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEIKGNRTNIGAVVETDEILSSSQKSSPTSSSYSSSQNQAASENADSPSPTSTLTSFCEDADTEDTYQATSRFHSFPTSPNLGNGLLVNKRDAGLSKFSFPHSSSDNIEAWSSVPPVEYISQVQKDGLGSSEGSTGVIGYQKTLSSASWEEILQQCTSGFQTVPSHVLNSSIEPLSSGIVLGQENSTHGKLLANNSAFKEDFGSSLTMASNWQVPLEDNTLSFSKGHVDQFPDLYSVYDIDGRLTDQKSHNATFGRGHEMFSAHPGIGNEEILSSNLELQFNEGELYSAMKSSSENDMSKEGAISYSLTLKQSLMDEEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVNDSSLSPSLSEDQLFSITDFSPKWTLPDLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYMAGSAQDANVTDVYAVGATEELHMHFRFESLLSLTSSNPPNNLSEGALEKQNLIRKLISIKEEEDCYGEEPKSQNVQIQHQSKEAIFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGVIHLAAALGYDWAIRPIVAAGVSINFRDVNGWTALHWAALCGRELTVGTLVTLGAAPGLPADPSPGNPLGIMPAELASINGHKGISGFLGESSLTSFLSSVSISDTKEDGVLDASKEKAIYTVTERKATPINDGFMPGDLSLKDSITAVCNATQAADRIHLMFRRMSFQRKQLSEHPDEFGSSDDSAISFVTARARKSGLSNNPAQAAAVRIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYRKIVWSVGILDKIILRWRRKGSGLRGFRPDTAAKDPAAVMEPPKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMAIASSSEEIIEGDDMIDIDSLLDDDALMSMTFD 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12802607 12819921 + Sed0012870.1 Sed06g0965 717508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0965 1093 CDD IPT 508 594 - -
Sed06g0965 1093 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Sed06g0965 1093 Pfam IQ calmodulin-binding motif 919 937 IPR000048 GO:0005515(InterPro)
Sed06g0965 1093 Pfam IQ calmodulin-binding motif 942 961 IPR000048 GO:0005515(InterPro)
Sed06g0965 1093 FunFam Calmodulin-binding transcription activator 2 916 964 - -
Sed06g0965 1093 MobiDBLite consensus disorder prediction 153 189 - -
Sed06g0965 1093 FunFam Calmodulin-binding transcription activator 2 502 597 - -
Sed06g0965 1093 Pfam IPT/TIG domain 508 581 IPR002909 -
Sed06g0965 1093 ProSiteProfiles IQ motif profile. 917 946 - -
Sed06g0965 1093 Gene3D - 673 811 IPR036770 -
Sed06g0965 1093 Gene3D - 917 964 - -
Sed06g0965 1093 SUPERFAMILY E set domains 509 593 IPR014756 -
Sed06g0965 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 919 967 IPR027417 -
Sed06g0965 1093 SMART iq_5 916 938 IPR000048 GO:0005515(InterPro)
Sed06g0965 1093 SMART iq_5 939 961 IPR000048 GO:0005515(InterPro)
Sed06g0965 1093 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Sed06g0965 1093 Pfam Ankyrin repeats (3 copies) 692 767 IPR002110 GO:0005515(InterPro)
Sed06g0965 1093 Gene3D Immunoglobulins 502 597 IPR013783 -
Sed06g0965 1093 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1056 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed06g0965 1093 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Sed06g0965 1093 SUPERFAMILY Ankyrin repeat 691 801 IPR036770 -
Sed06g0965 1093 ProSiteProfiles IQ motif profile. 940 964 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0965 Sed-Chr6:12802607 Sed10g1852 Sed-Chr10:35465764 0.00E+00 dispersed
Sed06g0965 Sed-Chr6:12802607 Sed06g0966 Sed-Chr6:12802607 0.00E+00 tandem
Sed10g1851 Sed-Chr10:35465764 Sed06g0965 Sed-Chr6:12802607 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38853 PF03859 CG-1 2.90E-50 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0965 K21596 - csv:101203707 1759.96