Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0965 ATGGGGGACCGTGGATCTTACGGCTTGGCTCCTCGTCTGGATATTGACCAGTTATTGTTAGAAGCAAAACATCGTTGGTTACGGCCAGCTGAAATTTGTGAAATACTCCGGAACTATCCTAAGTTTCATATTTCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGAAAGAAGAAAGACGGAAAAACTGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCACGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAATTAAGGGTAATAGAACAAATATTGGAGCTGTTGTTGAGACTGATGAGATTTTATCAAGTTCACAGAAGAGCAGTCCTACGAGTTCTAGTTATTCCAGCAGCCAGAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACCAGCACTTTGACATCATTTTGTGAAGATGCTGATACTGAAGATACTTACCAAGCAACCTCAAGATTTCACTCTTTCCCCACGTCACCAAATTTGGGCAATGGTCTTCTGGTGAATAAAAGAGATGCTGGTCTATCAAAATTTTCTTTTCCGCATTCATCTTCTGATAATATTGAAGCTTGGTCATCAGTTCCTCCTGTGGAATATATATCACAAGTTCAGAAAGATGGACTTGGGAGTAGTGAGGGTAGTACTGGTGTGATTGGTTATCAGAAGACACTCAGCTCTGCCTCATGGGAAGAGATCTTGCAACAATGTACAAGTGGATTTCAAACTGTACCGTCTCATGTCTTAAACTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAACTCATGGCAAGCTTTTAGCGAATAACAGTGCTTTTAAAGAGGACTTTGGGAGCTCTCTGACAATGGCATCAAATTGGCAGGTTCCTCTTGAAGACAATACTTTGTCCTTTTCAAAAGGGCACGTTGACCAGTTCCCAGATTTATATTCAGTTTATGACATAGATGGTAGGTTAACTGATCAGAAATCTCACAACGCAACTTTTGGACGTGGCCATGAGATGTTTTCTGCTCATCCTGGCATAGGGAATGAGGAGATTTTGTCAAGCAACCTCGAATTACAGTTCAATGAAGGAGAATTGTATTCTGCAATGAAGTCAAGTTCTGAAAATGATATGTCCAAAGAAGGTGCCATCAGCTATTCCTTGACTTTGAAACAATCATTAATGGATGAAGAGGAGAGTTTGAAGAAAGTTGACAGCTTCTCACGGTGGGTATCTAGAGAACTTGTGGAAGTTGATGATTTGCACATGCATCCATCGTCTGGTTTGTCTTGGAGCACTGTAGAATGTGGTGACATGGTGAATGATTCATCATTAAGCCCCTCTCTTTCTGAAGACCAGCTTTTCAGTATAACGGACTTTTCTCCAAAGTGGACACTTCCAGATTTAGAAACTGAGGTTGTGATTATAGGTAAGTTTCTGGGGAACAATCATGGCACAAAATGTTACTGGTCATGTATGTTTGGAGAAGTCGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTGTGCTGTCACGCACCGCCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGTGAGGTGCGTGAGTTTGATTACATGGCAGGCTCTGCTCAAGATGCCAATGTTACCGATGTGTATGCTGTTGGTGCTACAGAAGAATTACATATGCATTTTCGATTTGAGAGTTTACTGTCCCTTACATCTTCAAATCCTCCAAATAATCTCTCTGAAGGTGCCTTGGAGAAGCAGAACTTAATCAGAAAGCTTATCTCAATAAAAGAGGAAGAAGATTGTTATGGGGAAGAGCCAAAATCTCAAAATGTTCAAATTCAGCATCAAAGCAAGGAGGCAATTTTTGTAAAGCTGATGAAAGAAAAGCTGTATTCGTGGCTTATCCGGAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGGCAGGGGGTAATTCATCTAGCAGCAGCCCTTGGTTATGATTGGGCAATCAGGCCAATTGTAGCTGCAGGAGTGAGTATAAACTTTAGAGACGTTAATGGATGGACTGCTCTTCATTGGGCAGCCTTATGTGGCAGAGAGTTGACAGTCGGAACCCTTGTAACTTTGGGTGCTGCTCCGGGATTGCCGGCAGATCCATCTCCAGGAAATCCTTTGGGCATAATGCCTGCAGAGCTTGCTTCTATAAATGGACACAAAGGGATCTCTGGTTTTCTAGGAGAGTCATCATTGACCAGTTTTCTCTCATCAGTATCGATATCTGATACCAAAGAAGATGGTGTGCTAGACGCTTCAAAAGAGAAAGCTATATATACTGTTACGGAACGGAAGGCCACACCGATAAATGATGGCTTTATGCCTGGTGATTTGTCTTTGAAGGATTCAATAACTGCTGTTTGCAATGCTACTCAAGCTGCTGACCGTATACATCTGATGTTTAGAAGGATGTCATTTCAGAGGAAACAATTATCAGAGCATCCTGATGAATTTGGGTCCTCAGATGATAGTGCTATTTCATTTGTCACTGCCAGGGCACGTAAGTCTGGACTAAGTAACAACCCTGCTCAGGCTGCTGCAGTTCGCATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTGAGAGGACACCAGGTGAGGAAGCAATATAGAAAGATCGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGACCAGATACAGCTGCCAAGGATCCAGCCGCGGTGATGGAACCACCTAAAGAGGACGATTATGATTTTTTGAAGGAAGGAAGGAGGCAGACGGAGGAGAGATTTCAAAAAGCACTTACTAGGGTCAAGTCCATGGCTCAGTATCCTGAGGGACGAGATCAATACCGTAGGCTACTTACAGTGGTTCAAAAGTGCCGCGAAACTAAGGTGAGTAATATGGCTATTGCTAGTAGTTCAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCTCTGCTGGACGATGATGCTTTGATGTCTATGACATTTGATTGA 3282 42.35 MGDRGSYGLAPRLDIDQLLLEAKHRWLRPAEICEILRNYPKFHISSEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEIKGNRTNIGAVVETDEILSSSQKSSPTSSSYSSSQNQAASENADSPSPTSTLTSFCEDADTEDTYQATSRFHSFPTSPNLGNGLLVNKRDAGLSKFSFPHSSSDNIEAWSSVPPVEYISQVQKDGLGSSEGSTGVIGYQKTLSSASWEEILQQCTSGFQTVPSHVLNSSIEPLSSGIVLGQENSTHGKLLANNSAFKEDFGSSLTMASNWQVPLEDNTLSFSKGHVDQFPDLYSVYDIDGRLTDQKSHNATFGRGHEMFSAHPGIGNEEILSSNLELQFNEGELYSAMKSSSENDMSKEGAISYSLTLKQSLMDEEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVNDSSLSPSLSEDQLFSITDFSPKWTLPDLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYMAGSAQDANVTDVYAVGATEELHMHFRFESLLSLTSSNPPNNLSEGALEKQNLIRKLISIKEEEDCYGEEPKSQNVQIQHQSKEAIFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGVIHLAAALGYDWAIRPIVAAGVSINFRDVNGWTALHWAALCGRELTVGTLVTLGAAPGLPADPSPGNPLGIMPAELASINGHKGISGFLGESSLTSFLSSVSISDTKEDGVLDASKEKAIYTVTERKATPINDGFMPGDLSLKDSITAVCNATQAADRIHLMFRRMSFQRKQLSEHPDEFGSSDDSAISFVTARARKSGLSNNPAQAAAVRIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYRKIVWSVGILDKIILRWRRKGSGLRGFRPDTAAKDPAAVMEPPKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMAIASSSEEIIEGDDMIDIDSLLDDDALMSMTFD 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12802607 12819921 + Sed0012870.1 Sed06g0965 717508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0965 1093 CDD IPT 508 594 - -
Sed06g0965 1093 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Sed06g0965 1093 Pfam IQ calmodulin-binding motif 919 937 IPR000048 GO:0005515(InterPro)
Sed06g0965 1093 Pfam IQ calmodulin-binding motif 942 961 IPR000048 GO:0005515(InterPro)
Sed06g0965 1093 FunFam Calmodulin-binding transcription activator 2 916 964 - -
Sed06g0965 1093 MobiDBLite consensus disorder prediction 153 189 - -
Sed06g0965 1093 FunFam Calmodulin-binding transcription activator 2 502 597 - -
Sed06g0965 1093 Pfam IPT/TIG domain 508 581 IPR002909 -
Sed06g0965 1093 ProSiteProfiles IQ motif profile. 917 946 - -
Sed06g0965 1093 Gene3D - 673 811 IPR036770 -
Sed06g0965 1093 Gene3D - 917 964 - -
Sed06g0965 1093 SUPERFAMILY E set domains 509 593 IPR014756 -
Sed06g0965 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 919 967 IPR027417 -
Sed06g0965 1093 SMART iq_5 916 938 IPR000048 GO:0005515(InterPro)
Sed06g0965 1093 SMART iq_5 939 961 IPR000048 GO:0005515(InterPro)
Sed06g0965 1093 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Sed06g0965 1093 Pfam Ankyrin repeats (3 copies) 692 767 IPR002110 GO:0005515(InterPro)
Sed06g0965 1093 Gene3D Immunoglobulins 502 597 IPR013783 -
Sed06g0965 1093 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1056 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed06g0965 1093 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Sed06g0965 1093 SUPERFAMILY Ankyrin repeat 691 801 IPR036770 -
Sed06g0965 1093 ProSiteProfiles IQ motif profile. 940 964 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0965 K21596 - - csv:101203707 1759.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0965 Sed-Chr6:12802607 Sed10g1852 Sed-Chr10:35465764 0.00E+00 dispersed
Sed06g0965 Sed-Chr6:12802607 Sed06g0966 Sed-Chr6:12802607 0.00E+00 tandem
Sed10g1851 Sed-Chr10:35465764 Sed06g0965 Sed-Chr6:12802607 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38853 PF03859 CG-1 2.90E-50 No_clan Sed TF