Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0966 ATGGGGGACCGTGGATCTTACGGCTTGGCTCCTCGTCTGGATATTGACCAGTTATTGTTAGAAGCAAAACATCGTTGGTTACGGCCAGCTGAAATTTGTGAAATACTCCGGAACTATCCTAAGTTTCATATTTCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGAAAGAAGAAAGACGGAAAAACTGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCACGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAATTAAGGGTAATAGAACAAATATTGGAGCTGTTGTTGAGACTGATGAGATTTTATCAAGTTCACAGAAGAGCAGTCCTACGAGTTCTAGTTATTCCAGCAGCCAGAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACCAGCACTTTGACATCATTTTGTGAAGATGCTGATACTGATACTTACCAAGCAACCTCAAGATTTCACTCTTTCCCCACGTCACCAAATTTGGGCAATGGTCTTCTGGTGAATAAAAGAGATGCTGGTCTATCAAAATTTTCTTTTCCGCATTCATCTTCTGTTCAAAATGGTGACTTATGTAATACTTCAGATAATATTGAAGCTTGGTCATCAGTTCCTCCTGTGGAATATATATCACAAGTTCAGAAAGATGGACTTGGGAGTAGTGAGGGTAGTACTGGTGTGATTGGTTATCAGAAGACACTCAGCTCTGCCTCATGGGAAGAGATCTTGCAACAATGTACAAGTGGATTTCAAACTGTACCGTCTCATGTCTTAAACTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAACTCATGGCAAGCTTTTAGCGAATAACAGTGCTTTTAAAGAGGACTTTGGGAGCTCTCTGACAATGGCATCAAATTGGCAGGTTCCTCTTGAAGACAATACTTTGTCCTTTTCAAAAGGGCACGTTGACCAGTTCCCAGATTTATATTCAGTTTATGACATAGATGGTAGGTTAACTGATCAGAAATCTCACAACGCAACTTTTGGACGTGGCCATGAGATGTTTTCTGCTCATCCTGGCATAGGGAATGAGGAGATTTTGTCAAGCAACCTCGAATTACAGTTCAATGAAGGAGAATTGTATTCTGCAATGAAGTCAAGTTCTGAAAATGATATGTCCAAAGAAGGTGCCATCAGCTATTCCTTGACTTTGAAACAATCATTAATGGATGAAGAGGAGAGTTTGAAGAAAGTTGACAGCTTCTCACGGTGGGTATCTAGAGAACTTGTGGAAGTTGATGATTTGCACATGCATCCATCGTCTGGTTTGTCTTGGAGCACTGTAGAATGTGGTGACATGGTGAATGATTCATCATTAAGCCCCTCTCTTTCTGAAGACCAGCTTTTCAGTATAACGGACTTTTCTCCAAAGTGGACACTTCCAGATTTAGAAACTGAGGTTGTGATTATAGGTAAGTTTCTGGGGAACAATCATGGCACAAAATGTTACTGGTCATGTATGTTTGGAGAAGTCGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTGTGCTGTCACGCACCGCCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGTGAGGTGCGTGAGTTTGATTACATGGCAGGCTCTGCTCAAGATGCCAATGTTACCGATGTGTATGCTGTTGGTGCTACAGAAGAATTACATATGCATTTTCGATTTGAGAGTTTACTGTCCCTTACATCTTCAAATCCTCCAAATAATCTCTCTGAAGGTGCCTTGGAGAAGCAGAACTTAATCAGAAAGCTTATCTCAATAAAAGAGGAAGAAGATTGTTATGGGGAAGAGCCAAAATCTCAAAATGTTCAAATTCAGCATCAAAGCAAGGAGGCAATTTTTGTAAAGCTGATGAAAGAAAAGCTGTATTCGTGGCTTATCCGGAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGGCAGGGGGTAATTCATCTAGCAGCAGCCCTTGGTTATGATTGGGCAATCAGGCCAATTGTAGCTGCAGGAGTGAGTATAAACTTTAGAGACGTTAATGGATGGACTGCTCTTCATTGGGCAGCCTTATGTGGCAGAGAGTTGACAGTCGGAACCCTTGTAACTTTGGGTGCTGCTCCGGGATTGCCGGCAGATCCATCTCCAGGAAATCCTTTGGGCATAATGCCTGCAGAGCTTGCTTCTATAAATGGACACAAAGGGATCTCTGGTTTTCTAGGAGAGTCATCATTGACCAGTTTTCTCTCATCAGTATCGATATCTGATACCAAAGAAGATGGTGTGCTAGACGCTTCAAAAGAGAAAGCTATATATACTGTTACGGAACGGAAGGCCACACCGATAAATGATGGCTTTATGCCTGGTGATTTGTCTTTGAAGGATTCAATAACTGCTGTTTGCAATGCTACTCAAGCTGCTGACCGTATACATCTGATGTTTAGAAGGATGTCATTTCAGAGGAAACAATTATCAGAGCATCCTGATGAATTTGGGTCCTCAGATGATAGTGCTATTTCATTTGTCACTGCCAGGGCACGTAAGTCTGGACTAAGTAACAACCCTGCTCAGGCTGCTGCAGTTCGCATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTGAGAGGACACCAGGTGAGGAAGCAATATAGAAAGATCGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGACCAGATACAGCTGCCAAGGATCCAGCCGCGGTGATGGAACCACCTAAAGAGGACGATTATGATTTTTTGAAGGAAGGAAGGAGGCAGACGGAGGAGAGATTTCAAAAAGCACTTACTAGGGTCAAGTCCATGGCTCAGTATCCTGAGGGACGAGATCAATACCGTAGGCTACTTACAGTGGTTCAAAAGTGCCGCGAAACTAAGGTGAGTAATATGGCTATTGCTAGTAGTTCAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCTCTGCTGGACGATGATGCTTTGATGTCTATGACATTTGATTGA 3309 42.25 MGDRGSYGLAPRLDIDQLLLEAKHRWLRPAEICEILRNYPKFHISSEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEIKGNRTNIGAVVETDEILSSSQKSSPTSSSYSSSQNQAASENADSPSPTSTLTSFCEDADTDTYQATSRFHSFPTSPNLGNGLLVNKRDAGLSKFSFPHSSSVQNGDLCNTSDNIEAWSSVPPVEYISQVQKDGLGSSEGSTGVIGYQKTLSSASWEEILQQCTSGFQTVPSHVLNSSIEPLSSGIVLGQENSTHGKLLANNSAFKEDFGSSLTMASNWQVPLEDNTLSFSKGHVDQFPDLYSVYDIDGRLTDQKSHNATFGRGHEMFSAHPGIGNEEILSSNLELQFNEGELYSAMKSSSENDMSKEGAISYSLTLKQSLMDEEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVNDSSLSPSLSEDQLFSITDFSPKWTLPDLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYMAGSAQDANVTDVYAVGATEELHMHFRFESLLSLTSSNPPNNLSEGALEKQNLIRKLISIKEEEDCYGEEPKSQNVQIQHQSKEAIFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGVIHLAAALGYDWAIRPIVAAGVSINFRDVNGWTALHWAALCGRELTVGTLVTLGAAPGLPADPSPGNPLGIMPAELASINGHKGISGFLGESSLTSFLSSVSISDTKEDGVLDASKEKAIYTVTERKATPINDGFMPGDLSLKDSITAVCNATQAADRIHLMFRRMSFQRKQLSEHPDEFGSSDDSAISFVTARARKSGLSNNPAQAAAVRIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYRKIVWSVGILDKIILRWRRKGSGLRGFRPDTAAKDPAAVMEPPKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMAIASSSEEIIEGDDMIDIDSLLDDDALMSMTFD 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12802607 12819921 + Sed0012870.2 Sed06g0966 717509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0966 1102 Pfam IPT/TIG domain 517 590 IPR002909 -
Sed06g0966 1102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 928 976 IPR027417 -
Sed06g0966 1102 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Sed06g0966 1102 FunFam Calmodulin-binding transcription activator 2 925 973 - -
Sed06g0966 1102 ProSiteProfiles IQ motif profile. 949 973 - -
Sed06g0966 1102 SMART iq_5 925 947 IPR000048 GO:0005515(InterPro)
Sed06g0966 1102 SMART iq_5 948 970 IPR000048 GO:0005515(InterPro)
Sed06g0966 1102 Gene3D - 926 973 - -
Sed06g0966 1102 MobiDBLite consensus disorder prediction 153 189 - -
Sed06g0966 1102 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1065 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed06g0966 1102 SUPERFAMILY Ankyrin repeat 700 810 IPR036770 -
Sed06g0966 1102 CDD IPT 517 603 - -
Sed06g0966 1102 Gene3D Immunoglobulins 511 606 IPR013783 -
Sed06g0966 1102 SUPERFAMILY E set domains 518 602 IPR014756 -
Sed06g0966 1102 Pfam Ankyrin repeats (3 copies) 701 776 IPR002110 GO:0005515(InterPro)
Sed06g0966 1102 Gene3D - 682 820 IPR036770 -
Sed06g0966 1102 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Sed06g0966 1102 ProSiteProfiles IQ motif profile. 926 955 - -
Sed06g0966 1102 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Sed06g0966 1102 FunFam Calmodulin-binding transcription activator 2 511 606 - -
Sed06g0966 1102 Pfam IQ calmodulin-binding motif 928 946 IPR000048 GO:0005515(InterPro)
Sed06g0966 1102 Pfam IQ calmodulin-binding motif 951 970 IPR000048 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0966 Sed-Chr6:12802607 Sed10g1851 Sed-Chr10:35465764 0.00E+00 dispersed
Sed06g0965 Sed-Chr6:12802607 Sed06g0966 Sed-Chr6:12802607 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38854 PF03859 CG-1 2.90E-50 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0966 K21596 - csv:101203707 1749.56