Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0971 ATGGAGGGGTTGGGCGAGGTGAGAACCGTAGCTTCTTCGACCTGTAAATTTGTCGATGCCGAAGAAAGACGAGGTGCTTCGAAGAGGGGCAGAAATGAGTTTTCATCTCCAACTTCGTTGCTTGATTCCACAAGTATGCTGCTTAATACCCATGATCTGCCATCACCAACCACAGGCACTTTTCCAATACATCCAATAAAAGATGAACATAATTCATTGTTGAATCCTGTAATGCATGAAGATGGAAGTGAAGAGTCCTACTTCAGGTTCACACCTCCTGGGGAGCTTAATACTCTTCAAAGTCTTTTGCGCCTTGAAAACCAGGAAGCTAACACCGAGCATGAAGGTTTTGGATCAGAGAAAAGTCTGGGGGGTTTCGAATTTGTAGATGATAATAACATTTATAATGGGAATGTTGTTAGTGAGAAGTACTGTGAGAACATGGAAAACTGCATTTCTGGTATAATTAACAATCAAGAAGAGATTGAGATGTTGCAGCAGCAGCAGAATTCATTAGAAAGTGAAGAGAAGGGATCATATGTTTGTATGGAAATGTTAAGAACATCAGAAGATGGATACAACTGGAGGAAGTATGGACAAAAACAGGTAAAGGGTAGTGAATATCCCAGAAGCTACTATAAATGTACACGTCCTAATTGTCTCGTAAAGAAAAAGGTGGAGCGATCTCTTGATGGTCAAATAACAGAGATCATATATAAGGGTACTCATAATCATTCCAAACCCGATTCTAATCGGCGGCCTGCCATGCTTGGATCACCTGTGCTAACTCAAGATGATGATCAAGATCAAGTTGACACTCAATGTGGGGTGAATAAGGATATCAAACCTGTCTCAGATAATTGGAGTGTTGATGGTGATCTAGAAAGGACATCACTTTCCACTGAGCTTTCTGATCCCCTCGGGAAAACTGTTGCCGCTTTTGAATCATTCGGAACCCTAGAGCTTTCATCCACACTTGCTACCGCTAATGATGATGATGATCTTATAGCTCAGGGAAGTTTTGCAGCTTCCATTCAACCTGATGAGGCTGAACCTGAATTCAAAAGAAGGCGAAAAGAGGACAGTTCAATGGACACAAACTTGGCTTCGCGATGTGTACGAGAAACGAGAGTAGTTATCCAAATCGAAACTGAAGTTGACATACTTGAAGATGGGTATCGTTGGAGGAAGTATGGGCAAAAGGTTGTCAAAGGAAATCCAAATCCACGGAGCTACTACAAATGCACAAGTGCAGGCTGTTTAGTAAGGAAGCATGTTGAGAGAGCATCAGATGATCTGAAATGTGTGATTACAACATATGAAGGAAAACATAACCATCAAGTGCCTGCATCAAGAAACAGCAGTCAAGTAAACTTGAGTAATGCCAATGCACAATCTTCTGCTTCTCGTGTGCCACCGACGATGGGTTTATCCAGAAACTCAAACATCCGAAAGTCCGAAACACAAATTCAAGATCTTGTCACCCAGTTATATCCAAAACCCGAATTTAACCATGACTACCAGAGGTCTAGTTGTTTTGATACTTTTAGCAATGATATGAAACTTGGAGCTCCTTCATTCTGTCCAGTAACATTCCCTACATTGCAAAACAGAATGCTTTACAGCTCCTTTGGATTAAATTCAAATCATATTTCAACAAGTATTACTGGTTCTTTGGCATCCTTTCCATTGAGACAAAACCCTTCAGCTTCTAGTTTCGATTTTAGCAATGAGAGAATTCCAATACCACCTTTACAGGTTTTTCAGCTGGCTGGTCAGCAGTTAAGAGAGACGGATAGATTCCTCACACCTAAACAGGAGCACGACAACGATCACATCTGTGCTTCTTTCCAACCGATTGTCGATAGTTCGAGTAGATCTACATCGTCGGTCTCATCGGTTTATCAAAAAATCATGGGAAATTTTCCATAG 1932 41.15 MEGLGEVRTVASSTCKFVDAEERRGASKRGRNEFSSPTSLLDSTSMLLNTHDLPSPTTGTFPIHPIKDEHNSLLNPVMHEDGSEESYFRFTPPGELNTLQSLLRLENQEANTEHEGFGSEKSLGGFEFVDDNNIYNGNVVSEKYCENMENCISGIINNQEEIEMLQQQQNSLESEEKGSYVCMEMLRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTRPNCLVKKKVERSLDGQITEIIYKGTHNHSKPDSNRRPAMLGSPVLTQDDDQDQVDTQCGVNKDIKPVSDNWSVDGDLERTSLSTELSDPLGKTVAAFESFGTLELSSTLATANDDDDLIAQGSFAASIQPDEAEPEFKRRRKEDSSMDTNLASRCVRETRVVIQIETEVDILEDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASDDLKCVITTYEGKHNHQVPASRNSSQVNLSNANAQSSASRVPPTMGLSRNSNIRKSETQIQDLVTQLYPKPEFNHDYQRSSCFDTFSNDMKLGAPSFCPVTFPTLQNRMLYSSFGLNSNHISTSITGSLASFPLRQNPSASSFDFSNERIPIPPLQVFQLAGQQLRETDRFLTPKQEHDNDHICASFQPIVDSSSRSTSSVSSVYQKIMGNFP 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13206509 13214455 + Sed0006014.1 Sed06g0971 717514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0971 643 FunFam WRKY transcription factor 176 249 - -
Sed06g0971 643 Coils Coil 155 175 - -
Sed06g0971 643 FunFam WRKY transcription factor 57 375 449 - -
Sed06g0971 643 MobiDBLite consensus disorder prediction 342 362 - -
Sed06g0971 643 ProSiteProfiles WRKY domain profile. 190 248 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0971 643 ProSiteProfiles WRKY domain profile. 384 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0971 643 SUPERFAMILY WRKY DNA-binding domain 186 248 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0971 643 SUPERFAMILY WRKY DNA-binding domain 383 449 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0971 643 Gene3D WRKY domain 374 450 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0971 643 Gene3D WRKY domain 179 249 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0971 643 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 157 478 IPR044810 GO:0003700(InterPro)
Sed06g0971 643 MobiDBLite consensus disorder prediction 240 269 - -
Sed06g0971 643 Pfam WRKY DNA -binding domain 390 447 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0971 643 Pfam WRKY DNA -binding domain 190 245 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0971 643 SMART WRKY_cls 189 247 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0971 643 SMART WRKY_cls 389 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2081 Sed-Chr5:34023745 Sed06g0971 Sed-Chr6:13206509 1.00E-58 dispersed
Sed05g2082 Sed-Chr5:34023745 Sed06g0971 Sed-Chr6:13206509 2.10E-59 dispersed
Sed06g0971 Sed-Chr6:13206509 Sed08g1210 Sed-Chr8:24995717 2.40E-83 dispersed
Sed14g1331 Sed-Chr14:22164728 Sed06g0971 Sed-Chr6:13206509 1.70E-19 dispersed
Sed06g0971 Sed-Chr6:13206509 Sed08g2870 Sed-Chr8:39875708 1.00E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38855 PF03106 WRKY 4.50E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0971 K18835 - csv:101206605 660.218