Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0972 ATGAGGCTTGAACTGGACGACGGCGACGACGACGACGTCGTTCATGTTCCGCCTCACAACTTCTCCACCGTCGACGATGGCATTTTCCGATCCGGTTTCCCTCAGCCTCCCAATTTCCCCTTCCTCGAGAGCCTCAATCTCCGCACCATCATATATCTGTGTCCTGAGCCTTATCCACAGGAGAATTTGGAGTTTCTTAGAGCTAATAACATCAACCTTTTTCAATTCAAAATTGAAGGCACAAAGGAGCCTTTCGATATTCCGAAAGATGCAATCCTCGAGGCCCTGAAAATCCTGATTGATGTTAGGAATCACCCTATTTTGATCCACTGCAAGCGTGGAAAGCATCGAACAGGCTCACTCGTTGGCTGTCTGAGAAAGTTTCAGAACTGGTGCTTGGCTTCGGTGTTCGAGGAGTACAAGCAATTTGCAGGCATGAAATCGAGGACGACGGATCTTCAATTCATTGAGGCATTTGATCTTAAGTCTCTGAGGCAATGCGTTTACAGCATCATATACAAGTACCAAGGTTACAGCTCAAGCAAGAGGAGGCTGCTGTATAGAGAAGAAAAGTTGCAGAAACCCCAAAAAACATCAGTTTAG 603 46.43 MRLELDDGDDDDVVHVPPHNFSTVDDGIFRSGFPQPPNFPFLESLNLRTIIYLCPEPYPQENLEFLRANNINLFQFKIEGTKEPFDIPKDAILEALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLASVFEEYKQFAGMKSRTTDLQFIEAFDLKSLRQCVYSIIYKYQGYSSSKRRLLYREEKLQKPQKTSV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13290970 13293070 - Sed0027892.1 Sed06g0972 717515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0972 200 Gene3D Protein tyrosine phosphatase superfamily 15 163 IPR029021 -
Sed06g0972 200 FunFam probable tyrosine-protein phosphatase At1g05000 14 163 - -
Sed06g0972 200 Pfam Tyrosine phosphatase family 16 163 IPR004861 -
Sed06g0972 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 20 170 IPR020422 GO:0006470(InterPro)
Sed06g0972 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Sed06g0972 200 PRINTS Plant and fungal dual specificity phosphatase signature 52 65 IPR020428 GO:0016791(InterPro)
Sed06g0972 200 PRINTS Plant and fungal dual specificity phosphatase signature 71 85 IPR020428 GO:0016791(InterPro)
Sed06g0972 200 PRINTS Plant and fungal dual specificity phosphatase signature 15 32 IPR020428 GO:0016791(InterPro)
Sed06g0972 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311(InterPro)
Sed06g0972 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 15 190 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Sed06g0972 200 CDD PFA-DSP_Siw14 16 160 - -
Sed06g0972 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 160 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0972 Sed-Chr6:13290970 Sed08g1212 Sed-Chr8:25021100 8.00E-94 dispersed
Sed06g0972 Sed-Chr6:13290970 Sed01g0708 Sed-Chr1:5188054 7.80E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0972 K18045 - csv:101211082 326.635