Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0973 ATGGAATACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCATCTGCCCTCACGCCATCTTTTCGCCAAGGTTCTTTAGCTAATTTCGATGCATTGTGGACAATGAACTTGGGATCAGGTGAAATAATGGGATCGGGTTCTTACCCCATACGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACCGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGTACTATTTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGGTTACTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCTCGAGTGAAACTGAATGTTCTTATTATTTAAGAACTGGGCAATGTAAGTTTGGAAGTACATGTAAATTCCACCATCCTCAGCCGACTAATATGATGGTCTCACTGCGTGGTTCTCCTATTTACCCAACTGTACAATCACCAACTCCTGGTCAGCCCTCATATCCAGGAGGAAGCCCAAATTGGTCAAGGGCTTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCAAGTTATGCATCTTTAATTTTACCACAGGGAGTTCTCTCTGTTCCAGGCTGGAATACATTCAATGATCAGCTAGGATCAGCTTCATCTGCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCCGGCCAGCCTGAGTGTCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCATCTGTCGGTTTCATCATCCCAGACAACGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCTTGCCATTACGTCCGGGAGAACCTTTGTGTATCTTTTATTCTCGTTATGGGATCTGTAAGTTTGGTCCAAGCTGCAAGTTTGATCATCCTATGGGAATCTTCACATACAATCTCTCTGCAGCATCATCAACGAATGCAGCGGTTCAGCATTTGTTCGGGACAAGTTCAGGAACAACTGCACTGAACTTGTCATCTGAAGGGCTAGTTGAAGGAGCATCTTCAAAGCCAAGGCGACTATCGCTCAAGGAGGCTCGAGAGTTGCTGTCTGATGATGATAATATCGATGCAGATGACTGA 1215 45.27 MEYDSGIPMSVTEGHSSALTPSFRQGSLANFDALWTMNLGSGEIMGSGSYPIRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGVTGRVALNILGYPLRSSETECSYYLRTGQCKFGSTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQPSYPGGSPNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSASSAESPQQTRENVFPERPGQPECQFYMKTGDCKFGAICRFHHPRQRVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSTNAAVQHLFGTSSGTTALNLSSEGLVEGASSKPRRLSLKEARELLSDDDNIDADD 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13297904 13330794 + Sed0013686.1 Sed06g0973 717516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0973 404 Gene3D - 53 132 - -
Sed06g0973 404 SUPERFAMILY CCCH zinc finger 268 292 IPR036855 GO:0046872(InterPro)
Sed06g0973 404 MobiDBLite consensus disorder prediction 243 261 - -
Sed06g0973 404 FunFam Zinc finger nuclease 2 52 129 - -
Sed06g0973 404 SUPERFAMILY CCCH zinc finger 146 172 IPR036855 GO:0046872(InterPro)
Sed06g0973 404 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 Gene3D - 253 339 - -
Sed06g0973 404 SUPERFAMILY CCCH zinc finger 58 81 IPR036855 GO:0046872(InterPro)
Sed06g0973 404 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 SUPERFAMILY CCCH zinc finger 102 127 IPR036855 GO:0046872(InterPro)
Sed06g0973 404 FunFam CCCH type zinc finger protein 262 347 - -
Sed06g0973 404 MobiDBLite consensus disorder prediction 243 265 - -
Sed06g0973 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 291 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 337 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 80 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 171 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 125 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 Gene3D - 133 180 - -
Sed06g0973 404 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 PANTHER PROTEIN PHOSPHATASE RELATED 43 338 IPR050974 GO:0003729(PANTHER)
Sed06g0973 404 SMART c3hfinal6 53 80 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 SMART c3hfinal6 144 171 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 SMART c3hfinal6 264 291 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 SMART c3hfinal6 98 125 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 SMART c3hfinal6 310 337 IPR000571 GO:0046872(InterPro)
Sed06g0973 404 SUPERFAMILY CCCH zinc finger 313 337 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0973 Sed-Chr6:13297904 Sed08g1215 Sed-Chr8:25123498 2.60E-160 dispersed
Sed06g0973 Sed-Chr6:13297904 Sed06g0974 Sed-Chr6:13297904 4.30E-171 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38856 PF00642 zf-CCCH 2.70E-10 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0973 - - - 0.0