Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0974 ATGGAATACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCATCTGCCCTCACGCCATCTTTTCGCCAAGATGCATTGTGGACAATGAACTTGGGATCAGGTGAAATAATGGGATCGGGTTCTTACCCCATACGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACCGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGTACTATTTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGGTTACTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCTCGAGTGAAACTGAATGTTCTTATTATTTAAGAACTGGGCAATGTAAGTTTGGAAGTACATGTAAATTCCACCATCCTCAGCCGACTAATATGATGGTCTCACTGCGTGGTTCTCCTATTTACCCAACTGTACAATCACCAACTCCTGGTCAGCCCTCATATCCAGGAGGAAGCCCAAATTGGTCAAGGGCTTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCAAGTTATGCATCTTTAATTTTACCACAGGGAGTTCTCTCTGTTCCAGGCTGGAATACATTCAATGATCAGCTAGGATCAGCTTCATCTGCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCCGGCCAGCCTGAGTGTCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCATCTGTCGGTTTCATCATCCCAGACAACGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCTTGCCATTACGTCCGGGAGAACCTTTGTGTATCTTTTATTCTCGTTATGGGATCTGTAAGTTTGGTCCAAGCTGCAAGTTTGATCATCCTATGGGAATCTTCACATACAATCTCTCTGCAGCATCATCAACGAATGCAGCGGTTCAGCATTTGTTCGGGACAAGTTCAGGAACAACTGCACTGAACTTGTCATCTGAAGGGCTAGTTGAAGGAGCATCTTCAAAGCCAAGGCGACTATCGCTCAAGGAGGCTCGAGAGTTGCTGTCTGATGATGATAATATCGATGCAGATGACTGA 1197 45.45 MEYDSGIPMSVTEGHSSALTPSFRQDALWTMNLGSGEIMGSGSYPIRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGVTGRVALNILGYPLRSSETECSYYLRTGQCKFGSTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQPSYPGGSPNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSASSAESPQQTRENVFPERPGQPECQFYMKTGDCKFGAICRFHHPRQRVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSTNAAVQHLFGTSSGTTALNLSSEGLVEGASSKPRRLSLKEARELLSDDDNIDADD 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13297904 13330794 + Sed0013686.2 Sed06g0974 717517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0974 398 Gene3D - 247 333 - -
Sed06g0974 398 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 Gene3D - 127 174 - -
Sed06g0974 398 MobiDBLite consensus disorder prediction 237 259 - -
Sed06g0974 398 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 SUPERFAMILY CCCH zinc finger 52 75 IPR036855 GO:0046872(InterPro)
Sed06g0974 398 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 FunFam Zinc finger nuclease 2 46 123 - -
Sed06g0974 398 FunFam CCCH type zinc finger protein 256 341 - -
Sed06g0974 398 SMART c3hfinal6 258 285 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 SMART c3hfinal6 304 331 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 SMART c3hfinal6 47 74 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 Gene3D - 47 126 - -
Sed06g0974 398 MobiDBLite consensus disorder prediction 237 255 - -
Sed06g0974 398 PANTHER PROTEIN PHOSPHATASE RELATED 39 332 IPR050974 GO:0003729(PANTHER)
Sed06g0974 398 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872(InterPro)
Sed06g0974 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 331 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 285 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 74 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Sed06g0974 398 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Sed06g0974 398 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872(InterPro)
Sed06g0974 398 SUPERFAMILY CCCH zinc finger 262 286 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0974 Sed-Chr6:13297904 Sed08g1215 Sed-Chr8:25123498 4.20E-155 dispersed
Sed06g0973 Sed-Chr6:13297904 Sed06g0974 Sed-Chr6:13297904 4.30E-171 tandem
Sed06g0974 Sed-Chr6:13297904 Sed06g0975 Sed-Chr6:13298562 1.50E-155 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38857 PF00642 zf-CCCH 2.70E-10 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0974 - - - 0.0