Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0975 ATGAACTTGGGATCAGGTGAAATAATGGGATCGGGTTCTTACCCCATACGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACCGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGTACTATTTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGGTTACTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCTCGAGTGAAACTGAATGTTCTTATTATTTAAGAACTGGGCAATGTAAGTTTGGAAGTACATGTAAATTCCACCATCCTCAGCCGACTAATATGATGGTCTCACTGCGTGGTTCTCCTATTTACCCAACTGTACAATCACCAACTCCTGGTCAGCCCTCATATCCAGGAGGAAGCCCAAATTGGTCAAGGGCTTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCAAGTTATGCATCTTTAATTTTACCACAGGGAGTTCTCTCTGTTCCAGGCTGGAATACATTCAATGATCAGCTAGGATCAGCTTCATCTGCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCCGGCCAGCCTGAGTGTCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCATCTGTCGGTTTCATCATCCCAGACAACGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCTTGCCATTACGTCCGGGAGAACCTTTGTGTATCTTTTATTCTCGTTATGGGATCTGTAAGTTTGGTCCAAGCTGCAAGTTTGATCATCCTATGGGAATCTTCACATACAATCTCTCTGCAGCATCATCAACGAATGCAGCGGTTCAGCATTTGTTCGGGACAAGTTCAGGAACAACTGCACTGAACTTGTCATCTGAAGGGCTAGTTGAAGGAGCATCTTCAAAGCCAAGGCGACTATCGCTCAAGGAGGCTCGAGAGTTGCTGTCTGATGATGATAATATCGATGCAGATGACTGA 1107 45.08 MNLGSGEIMGSGSYPIRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGVTGRVALNILGYPLRSSETECSYYLRTGQCKFGSTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQPSYPGGSPNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSASSAESPQQTRENVFPERPGQPECQFYMKTGDCKFGAICRFHHPRQRVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSTNAAVQHLFGTSSGTTALNLSSEGLVEGASSKPRRLSLKEARELLSDDDNIDADD 368
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 13298562 13330794 + Sed0013686.3 Sed06g0975 717518
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0975 368 MobiDBLite consensus disorder prediction 207 225 - -
Sed06g0975 368 SUPERFAMILY CCCH zinc finger 277 301 IPR036855 GO:0046872(InterPro)
Sed06g0975 368 SUPERFAMILY CCCH zinc finger 110 136 IPR036855 GO:0046872(InterPro)
Sed06g0975 368 ProSiteProfiles Zinc finger C3H1-type profile. 62 90 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 ProSiteProfiles Zinc finger C3H1-type profile. 228 256 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 Gene3D - 94 144 - -
Sed06g0975 368 ProSiteProfiles Zinc finger C3H1-type profile. 17 45 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 FunFam Zinc finger nuclease 2 16 93 - -
Sed06g0975 368 ProSiteProfiles Zinc finger C3H1-type profile. 108 136 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 PANTHER PROTEIN PHOSPHATASE RELATED 11 302 IPR050974 GO:0003729(PANTHER)
Sed06g0975 368 SMART c3hfinal6 108 135 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 SMART c3hfinal6 274 301 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 SMART c3hfinal6 62 89 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 SMART c3hfinal6 228 255 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 SMART c3hfinal6 17 44 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 MobiDBLite consensus disorder prediction 207 229 - -
Sed06g0975 368 SUPERFAMILY CCCH zinc finger 66 91 IPR036855 GO:0046872(InterPro)
Sed06g0975 368 SUPERFAMILY CCCH zinc finger 22 45 IPR036855 GO:0046872(InterPro)
Sed06g0975 368 Gene3D - 218 303 - -
Sed06g0975 368 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 Gene3D - 17 93 - -
Sed06g0975 368 SUPERFAMILY CCCH zinc finger 232 256 IPR036855 GO:0046872(InterPro)
Sed06g0975 368 FunFam CCCH type zinc finger protein 226 311 - -
Sed06g0975 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 229 255 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 111 135 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 301 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 18 44 IPR000571 GO:0046872(InterPro)
Sed06g0975 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 65 89 IPR000571 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0975 Sed-Chr6:13298562 Sed08g1215 Sed-Chr8:25123498 3.20E-141 dispersed
Sed06g0974 Sed-Chr6:13297904 Sed06g0975 Sed-Chr6:13298562 1.50E-155 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38858 PF00642 zf-CCCH 2.40E-10 CL0537 Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0975 - - - 0.0