Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g0975 | ATGAACTTGGGATCAGGTGAAATAATGGGATCGGGTTCTTACCCCATACGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACCGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGTACTATTTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGGTTACTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCTCGAGTGAAACTGAATGTTCTTATTATTTAAGAACTGGGCAATGTAAGTTTGGAAGTACATGTAAATTCCACCATCCTCAGCCGACTAATATGATGGTCTCACTGCGTGGTTCTCCTATTTACCCAACTGTACAATCACCAACTCCTGGTCAGCCCTCATATCCAGGAGGAAGCCCAAATTGGTCAAGGGCTTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCAAGTTATGCATCTTTAATTTTACCACAGGGAGTTCTCTCTGTTCCAGGCTGGAATACATTCAATGATCAGCTAGGATCAGCTTCATCTGCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCCGGCCAGCCTGAGTGTCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCATCTGTCGGTTTCATCATCCCAGACAACGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCTTGCCATTACGTCCGGGAGAACCTTTGTGTATCTTTTATTCTCGTTATGGGATCTGTAAGTTTGGTCCAAGCTGCAAGTTTGATCATCCTATGGGAATCTTCACATACAATCTCTCTGCAGCATCATCAACGAATGCAGCGGTTCAGCATTTGTTCGGGACAAGTTCAGGAACAACTGCACTGAACTTGTCATCTGAAGGGCTAGTTGAAGGAGCATCTTCAAAGCCAAGGCGACTATCGCTCAAGGAGGCTCGAGAGTTGCTGTCTGATGATGATAATATCGATGCAGATGACTGA | 1107 | 45.08 | MNLGSGEIMGSGSYPIRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGVTGRVALNILGYPLRSSETECSYYLRTGQCKFGSTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQPSYPGGSPNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSASSAESPQQTRENVFPERPGQPECQFYMKTGDCKFGAICRFHHPRQRVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSTNAAVQHLFGTSSGTTALNLSSEGLVEGASSKPRRLSLKEARELLSDDDNIDADD | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 13298562 | 13330794 | + | Sed0013686.3 | Sed06g0975 | 717518 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g0975 | 368 | MobiDBLite | consensus disorder prediction | 207 | 225 | - | - | |
| Sed06g0975 | 368 | SUPERFAMILY | CCCH zinc finger | 277 | 301 | IPR036855 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | SUPERFAMILY | CCCH zinc finger | 110 | 136 | IPR036855 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | ProSiteProfiles | Zinc finger C3H1-type profile. | 62 | 90 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | ProSiteProfiles | Zinc finger C3H1-type profile. | 228 | 256 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | Gene3D | - | 94 | 144 | - | - | |
| Sed06g0975 | 368 | ProSiteProfiles | Zinc finger C3H1-type profile. | 17 | 45 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | FunFam | Zinc finger nuclease 2 | 16 | 93 | - | - | |
| Sed06g0975 | 368 | ProSiteProfiles | Zinc finger C3H1-type profile. | 108 | 136 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | PANTHER | PROTEIN PHOSPHATASE RELATED | 11 | 302 | IPR050974 | GO:0003729(PANTHER) | |
| Sed06g0975 | 368 | SMART | c3hfinal6 | 108 | 135 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | SMART | c3hfinal6 | 274 | 301 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | SMART | c3hfinal6 | 62 | 89 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | SMART | c3hfinal6 | 228 | 255 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | SMART | c3hfinal6 | 17 | 44 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | MobiDBLite | consensus disorder prediction | 207 | 229 | - | - | |
| Sed06g0975 | 368 | SUPERFAMILY | CCCH zinc finger | 66 | 91 | IPR036855 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | SUPERFAMILY | CCCH zinc finger | 22 | 45 | IPR036855 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | Gene3D | - | 218 | 303 | - | - | |
| Sed06g0975 | 368 | ProSiteProfiles | Zinc finger C3H1-type profile. | 274 | 302 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | Gene3D | - | 17 | 93 | - | - | |
| Sed06g0975 | 368 | SUPERFAMILY | CCCH zinc finger | 232 | 256 | IPR036855 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | FunFam | CCCH type zinc finger protein | 226 | 311 | - | - | |
| Sed06g0975 | 368 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 229 | 255 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 111 | 135 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 275 | 301 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 18 | 44 | IPR000571 | GO:0046872(InterPro) | |
| Sed06g0975 | 368 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 65 | 89 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed06g0975 | Sed-Chr6:13298562 | Sed08g1215 | Sed-Chr8:25123498 | 3.20E-141 | dispersed | |
| Sed06g0974 | Sed-Chr6:13297904 | Sed06g0975 | Sed-Chr6:13298562 | 1.50E-155 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 38858 | PF00642 | zf-CCCH | 2.40E-10 | CL0537 | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g0975 | - | - | - | 0.0 |