Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0991 ATGGCGCCATTGTTGCAGAGCTCTCAACCGTGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTGGCGCATCAGGATGAAGTGGTTCGGGTCCTCACCAACACTCTCGAGACATCCAGTTGTCCTCACATGCTCTTCTATGGGCCGCCTGGCACTGGAAAAACCACCACCGCTCTCGCAATCGCTCATCAACTATTCGGACCTGAACTTTACAAGTCCAGAGTCTTGGAATTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACAAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCCAGGGGGCTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCTTGAGGCGCACCATGGAAACACACTCCAAAGTAACACGATTCTTCTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAACCACTCTCTGAAGAGGTTATGAGTAAGCGTATATTGCACATTAGTAATGAAGAAGGGCTTAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATTACATATTTACAGTCAGCCACACGCTTATTTGGATCATCAATCTCCTCCAAGGATCTGATAAGCGTATCTGGGGTTATCCCTCGTGAGGTTGTTGATGCGCTTTTTGCTGCTTGTAAAAGTGGGAACTTTGATCTTGCAAACAAGGAAGTCAATAATGTAATTGCAGATGGATATCCAGTTGCTCAGATGCTTTCCCAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAAAAATTGGCTGAAGCAGATAAGTGTCTGGTTGATGGGGCAGACGAATATTTGCAGCTGCTGGACGTGGTTAGTGAAACAATGCAAGCTTCAAGCAGTATGCAGTTTTAG 1011 45.1 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRPGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSSISSKDLISVSGVIPREVVDALFAACKSGNFDLANKEVNNVIADGYPVAQMLSQIFEVVIEAHDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSETMQASSSMQF 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14073763 14091600 - Sed0019306.1 Sed06g0991 717534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0991 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Sed06g0991 336 FunFam Replication factor C subunit 4 176 239 - -
Sed06g0991 336 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Sed06g0991 336 FunFam Replication factor C subunit 5 3 174 - -
Sed06g0991 336 CDD AAA 26 166 - -
Sed06g0991 336 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
Sed06g0991 336 Pfam ATPase family associated with various cellular activities (AAA) 45 173 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed06g0991 336 Gene3D - 3 173 IPR027417 -
Sed06g0991 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 332 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Sed06g0991 336 SMART AAA_5 41 174 IPR003593 GO:0016887(InterPro)
Sed06g0991 336 FunFam Replication factor C subunit 4 240 329 - -
Sed06g0991 336 Gene3D - 176 239 - -
Sed06g0991 336 Gene3D - 240 329 - -
Sed06g0991 336 Pfam RCF1/5-like, AAA+ ATPase lid domain 185 221 - -
Sed06g0991 336 CDD HLD_clamp_RFC 174 233 IPR047854 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1302 Sed-Chr3:8338948 Sed06g0991 Sed-Chr6:14073763 1.30E-51 dispersed
Sed03g1303 Sed-Chr3:8338948 Sed06g0991 Sed-Chr6:14073763 1.30E-51 dispersed
Sed06g0991 Sed-Chr6:14073763 Sed14g0728 Sed-Chr14:7533756 3.50E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0991 K10755 - csv:101221224 620.928