Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0997 ATGCCAGCTTCCCCTTCATTCCCATCTGGGCCTCGCGCCAAATGGAAGAAGAAGAAGAGGGACTCGCAAATGGGCCGCAGAAACAACAACGGCACCTACAGGCATGACGACGACGACGACGATGAAGATCTCGACAACGAAATGGAACGCGACTATGACGATTCTGAGGACCTTCTGCCGATGCCGAATTCGAGCCTTCCGGAGACTGAGCTCTTGTCGAATGATAAAGTGCCTGTCTCGGAGTTTCCTCGGGTGGTCAAGAGGGCTGTCACTCGGCCTCACTCTTCTGTGTTGGACGTTGTGGCGATGGAGAGGGCGAATCTGTTCGGACAAAGCAAGGGGCTGCCTGGAAATCCCTTGATTTTGGAGAATGTGTCTTATGGGCAGCTGCAGGCGCTGTCTGCTATGCCTGCGGATTGTCCGGCTTTGCTCGATCAGGAAAGGGTGGAGGCTGGGAATGCAGCCTATGTAATAACCCCACCGCCGATTATGGAAGGGCATGGCGTGGTTAAGCGGTTTGGGAGTAGGGTTCATGCTGTTCCTATGCACTCAGATTGGTTTTCACCTGCCACAGTGCATCGACTTGAGAGACAAGTTGTTCCACATTTTTTCTCTGGGAAATTGCCTGACTGCACTCCTGAGAAGTATATGGAAATTCGTAATTTTGTTGTTGCCAACTACATGGAGAATCCTGAGAGAAGGGTTACAGTTTCAAACTTCCAAGGATTGGTTGGTGGTGTCAGTAACGAAGATTTAACTCGAATTGTTCGATTTCTTGATCATTGGGGTATTATAAATTATTGTGCCCCATCACCTAGATGTGAACCATGGAATAGCAGTTCATACTTGAGAGAAGATGTGAACGGTGAGATTCATGTGCCATCAGCTGCTTTGAAGCCTATTGATAGCTTAATCAAAATTGACAAGCCCAAATGTAGGCTCAAGGCAGCTGATGTCTATTCGGCACTTTCATGCCATGATAACAATGATCGTTTGTGTGATTTGGACAACAGAATTCGAGAGCATCTCGCTGAAAATCATTGTAGCTCTTGTTCTCGGTCTGTTCCCAGTGCATACTATCAATCACAGAAAGAGGTTGATGTCTTACTTTGCTCTGACTGCTTCCATGAAGGCAAATATGTTTCTGGTCATTCAAGCATTGATTTTCTGAAGGTGGACACAAAAGATTACAATGAACTGGATTGTGAAAATTGGACTGATCAAGAAACTCTATTACTTTTAGAGGCAATAGAATTGTATAAGGAGAATTGGAATGAAATTACAGAACATGTTGGGTCCAAGTCTAAAGCTCAATGCATTATACATTTTCTACGTTTATCAGTGGAGGATGGCATTCTAGAAGATGTTGATGTGCCTGGTGTTCCTCTCTCATCCAATTCGTCACATGGAGAAGATAACAAGAATTCACGTTCAAATATGAATGGAAATGTAGCAGGATGTTCCTCTCAAGACAATAAAGAGATGCATGATAGGCTACCGTTTGCTAATTCTGGTAACCCAGTCATGGCATTGGTTGCTTTTCTTGCATCTGCTGTTGGACCGAGAGTTGCTGCATCATGTGCTCATGCATCCTTAGCTGCATTAGCTGAGGACAGTGCAGCTTCTTCTGGGAGCATATTTCAAATGGAAGGCTCTGAGAATATGAATAGGTCGAATGCAGAGGTCACACATGGCAGAGACGGTGGCACTGGCACCCATGGAGAACTTCAAAATTCAGCCAAGCAAAAAGATGAGAATAAGGCAGAGACAGAGTTAACCTTATTATCTGCTGAAAGAGTTAAAGTTGCAGCAAAAGTAGGCCTTGCCGCGGCCGCAACCAAGGCAAAATTGTTTGCAGACCATGAAGAACGAGAAATCCAACGCTTGTCTGCTAATATTATTAATCACCAGTTAAAAAGACTGGAGTTGAAGCTAAAGCAGTTTGCAGAAGTAGAAACCTTCTTGATGAAGGAGTGCGAACAAGTCGAGAGGACACGGCAGAGGTTTGTTGCCGAGCGAGCAAGAATGTTAGGTGTCCAATTTGGACCTGCTGGAGTTTCCTCTCCTGCGAGTTTACCAGCCGTTATCCCTCCCACAGTAAACAACAGTGCAAACAATATGATCTCGCCTCCACCATCCCAGCCGAGTGTTTCGGGGTATAGCAACAACCAACCCCTCCATCCCCACATGTCGTACATGCCTCGACAGCCCATGTTTGGTTTGGGACAAAGACTACCCTTATCAGCAAATCAGCAGCAGCAGCAGCCCTCGGCAACTTCGTCAAATGTCATGTTCAATGGCCCAAGCAATGCACAAGCTTCTCTCAGTCACTCAATGATGAGGCCAGTTAGTGGATCCAGCTCTGGATTAGGCTGA 2376 46.04 MPASPSFPSGPRAKWKKKKRDSQMGRRNNNGTYRHDDDDDDEDLDNEMERDYDDSEDLLPMPNSSLPETELLSNDKVPVSEFPRVVKRAVTRPHSSVLDVVAMERANLFGQSKGLPGNPLILENVSYGQLQALSAMPADCPALLDQERVEAGNAAYVITPPPIMEGHGVVKRFGSRVHAVPMHSDWFSPATVHRLERQVVPHFFSGKLPDCTPEKYMEIRNFVVANYMENPERRVTVSNFQGLVGGVSNEDLTRIVRFLDHWGIINYCAPSPRCEPWNSSSYLREDVNGEIHVPSAALKPIDSLIKIDKPKCRLKAADVYSALSCHDNNDRLCDLDNRIREHLAENHCSSCSRSVPSAYYQSQKEVDVLLCSDCFHEGKYVSGHSSIDFLKVDTKDYNELDCENWTDQETLLLLEAIELYKENWNEITEHVGSKSKAQCIIHFLRLSVEDGILEDVDVPGVPLSSNSSHGEDNKNSRSNMNGNVAGCSSQDNKEMHDRLPFANSGNPVMALVAFLASAVGPRVAASCAHASLAALAEDSAASSGSIFQMEGSENMNRSNAEVTHGRDGGTGTHGELQNSAKQKDENKAETELTLLSAERVKVAAKVGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTRQRFVAERARMLGVQFGPAGVSSPASLPAVIPPTVNNSANNMISPPPSQPSVSGYSNNQPLHPHMSYMPRQPMFGLGQRLPLSANQQQQQPSATSSNVMFNGPSNAQASLSHSMMRPVSGSSSGLG 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14390516 14401873 - Sed0006418.1 Sed06g0997 717540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0997 791 CDD SANT 404 446 IPR001005 -
Sed06g0997 791 Pfam Myb-like DNA-binding domain 403 445 IPR001005 -
Sed06g0997 791 Pfam SWIRM-associated region 1 606 676 IPR032451 -
Sed06g0997 791 MobiDBLite consensus disorder prediction 704 729 - -
Sed06g0997 791 MobiDBLite consensus disorder prediction 461 490 - -
Sed06g0997 791 ProSiteProfiles SANT domain profile. 400 451 IPR017884 -
Sed06g0997 791 MobiDBLite consensus disorder prediction 461 500 - -
Sed06g0997 791 FunFam SWI/SNF complex subunit SMARCC2 isoform C 401 451 - -
Sed06g0997 791 Coils Coil 619 639 - -
Sed06g0997 791 MobiDBLite consensus disorder prediction 36 54 - -
Sed06g0997 791 MobiDBLite consensus disorder prediction 559 587 - -
Sed06g0997 791 Pfam SWIRM domain 188 267 IPR007526 GO:0005515(InterPro)
Sed06g0997 791 SUPERFAMILY Homeodomain-like 403 450 IPR009057 -
Sed06g0997 791 ProSiteProfiles SWIRM domain profile. 178 276 IPR007526 GO:0005515(InterPro)
Sed06g0997 791 SMART sant 401 449 IPR001005 -
Sed06g0997 791 MobiDBLite consensus disorder prediction 745 791 - -
Sed06g0997 791 SUPERFAMILY Homeodomain-like 177 276 IPR009057 -
Sed06g0997 791 MobiDBLite consensus disorder prediction 704 791 - -
Sed06g0997 791 PANTHER SWI/SNF COMPLEX-RELATED 197 709 - -
Sed06g0997 791 Gene3D - 184 271 IPR036388 -
Sed06g0997 791 Gene3D - 403 451 - -
Sed06g0997 791 ProSiteProfiles Myb-like domain profile. 404 447 IPR001005 -
Sed06g0997 791 MobiDBLite consensus disorder prediction 1 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0997 K11649 - - csv:101220514 1281.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2376 Sed-Chr5:36195232 Sed06g0997 Sed-Chr6:14390516 0.00E+00 dispersed
Sed05g2324 Sed-Chr5:35707852 Sed06g0997 Sed-Chr6:14390516 9.70E-47 transposed
Sed05g2375 Sed-Chr5:36195232 Sed06g0997 Sed-Chr6:14390516 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37