Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1004 ATGGCGATGGCGAAAGAGGCTGTGTTCGACGGAGAAGCGGCAGCGAGAGCGGTGGCGGAGCTGAGAGAGAGTTACAATTCCGGGAAGACGAGAAGCTACGATTGGAGAGTGAAACAACTGAAGAGTCTGTTGAAATTGGTGGAAGAAAACGAGCAACAGATGGTCCATACCGTTCATTCCGATCTCTCCAAACCCGAATTCGAAGCTTTTGCTCACGAGATAGCAATGTTAAAGAGTGCATGTAAACTGGCACTTAAAGAACTCAAGCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATGACCACATTTCCTTCGTCTGCTGCAATTGTACCTGAACCATTCGGTGTTGTCCTGATCATTTCTGCTTGGAATTATCCAATCTTATTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCCGTGGTTCTAAAGCCATCAGAAGTTTCCCCAGCAACATCCTCTTTACTGGCAAAACTTGTAGGCAAATATTTGGACACTTGTGCTGTAAAGGTTGTTGAGGGTGCTGTTTCTGAAACCTCTGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGTAATGGAAGAGTGGGGCGTATAGTGATGGCTGCTGCTGCCAAGCACCTTACACCCGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAATAGTTGATTCAGAAATCAATTTACAAGTTGCGAGTAAGCGGATTGTTGTTGGTAAGTGGGGCTGTAACAATGGACAAGCATGCATTGCGCCTGATTATATCTTAACTACCAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGACATTTTACGGAAAGAATCCACTGGAAACTAAAGATTTATCTCGCATTGTGAATGTGAATCACTTCGCTCGCTTGTCGAGGCTCTTGGATGACGAAAAAGTTTTTGGCAAGATTGTGCATGGAGGTGAAAGGGACAAAACCAAATTACAGATTGCTCCCACCCTTTTATTGGATGCCCCTCGAGACTCTCTGATTATGACCGAGGAGATCTTTGGTCCCTTGCTCCCTATTCTCACGGTAGACAAAGTGGAGGATAGCTTCGAAATCGTTAACTCGGGCTCAAAACCGCTTGCGGCATATTTATTTACCAACAACAAGAAGCTCAAGGAACAGTTCGTGGCTTCTATCTCTGCAGGGGGTGTGGCCATCAATGACACCGTCTTACATCTGACAGTTAACACACTACCATTTGGAGGAGTTGGGGAGAGTGGAATGGGAGCCTACCATGGGAAGTTTTCTTTTGATGCATTTAGCCATAAGAAGGCTGTTCTTTATCGAAGTTTCGCAGGCGATTCGTCGATGCGATACCCGCCGTACACGAAGGAAAAATTGGGAATTCTCAAAGCTCTTCTTGGAGGAGACATATGGGGACTCATTCGTGCTCTTTTGGGATGGTCATAA 1461 44.97 MAMAKEAVFDGEAAARAVAELRESYNSGKTRSYDWRVKQLKSLLKLVEENEQQMVHTVHSDLSKPEFEAFAHEIAMLKSACKLALKELKRWMAPEKVKTSMTTFPSSAAIVPEPFGVVLIISAWNYPILLSLDPVVGAIAAGNAVVLKPSEVSPATSSLLAKLVGKYLDTCAVKVVEGAVSETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVIVDSEINLQVASKRIVVGKWGCNNGQACIAPDYILTTKEFAPKLVESLKQELETFYGKNPLETKDLSRIVNVNHFARLSRLLDDEKVFGKIVHGGERDKTKLQIAPTLLLDAPRDSLIMTEEIFGPLLPILTVDKVEDSFEIVNSGSKPLAAYLFTNNKKLKEQFVASISAGGVAINDTVLHLTVNTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDSSMRYPPYTKEKLGILKALLGGDIWGLIRALLGWS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14802316 14822432 - Sed0002719.1 Sed06g1004 717547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1004 486 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 441 IPR016162 GO:0016491(InterPro)
Sed06g1004 486 FunFam Aldehyde dehydrogenase 223 423 - -
Sed06g1004 486 Pfam Aldehyde dehydrogenase family 10 443 IPR015590 GO:0016491(InterPro)
Sed06g1004 486 PIRSF ALDH 2 480 IPR012394 GO:0006081(InterPro)
Sed06g1004 486 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 223 423 IPR016163 GO:0016620(InterPro)
Sed06g1004 486 PANTHER ALDEHYDE DEHYDROGENASE 13 485 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
Sed06g1004 486 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 219 226 IPR029510 GO:0016491(InterPro)
Sed06g1004 486 FunFam Aldehyde dehydrogenase 22 226 - -
Sed06g1004 486 SUPERFAMILY ALDH-like 15 458 IPR016161 GO:0016491(InterPro)
Sed06g1004 486 CDD ALDH_F3FHI 14 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2367 Sed-Chr5:36139360 Sed06g1004 Sed-Chr6:14802316 4.20E-229 dispersed
Sed05g2368 Sed-Chr5:36139360 Sed06g1004 Sed-Chr6:14802316 1.60E-147 dispersed
Sed06g1004 Sed-Chr6:14802316 Sed07g1685 Sed-Chr7:15029591 1.10E-133 dispersed
Sed06g1004 Sed-Chr6:14802316 Sed05g1142 Sed-Chr5:11860219 1.80E-131 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1004 K00128 - csv:101219329 817.379