Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1062 ATGTTTCTGCAGGGTAATTACTTTAGTGGATTCATTCCCAATGAATTGGGGAACCTTTCGGCACTTACAAGTTTAGATATTTCAAGTAACTCGCTCGGTGGAAATATTCCCATCTCGCTTGGGAAGTTGAGCAAGCTTATTACTCTAAATGTCTCTGCCAATTTTCTTGTTGGATCAATACCGAATGCTGGAGTGCTAATCAGCTTCTCGGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGTGGGAAACAAATAAATGTGCTGTGCAAAGATGACAAAGAGGGACCTGGAATAAAAGAGTCACCATTCTCAGTGCAAAATGAACTTGGGAGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTTGGCAACTGTGGGTGCATTACTGCTGGTTGCCCTAATGTGTTTCTGGGGCTGCTTTCTGTATAAAAAGTTCGGCAAAAATGACAGTAAAGCTCTAGTGCTGGACGTTTGTAGAGGTGCTTCGGGTGTAATGTTTCACGGAGACTTGCCATATTCATCTAAAGATATTGTGAAGAAATTTGAGTCATTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTTTACAAGCTTGCAATGGATGATGGCAATGCTTTTGCCTTGAAAAGAATTGTAAAACTGAATGAAGGCTTTGACCGTTTCTTTGAGAGAGAGCTCGAAATACTTGGAAGCATAAAGCACAGGTTCCTTGTGAATTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTTCTGGAGGCAGCCTTGATGAGGCATTACACGGTGTGCGTACTGAAGCATCTGAGCAACTAGACTGGGACGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCACCACGGATCATACACCGAGACATAAAATCAAGCAACATTTTACTTGATGCTAATTTGGAGGCTCGAGTTTCTGATTTTGGACTTGCAAAGCTTTTAGAGGATGAAGAATCGCATATCACGACTATTGTTGCAGGAACATTTGGTTATCTAGCTCCTGAGTACATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTGTTGAGTGGCAAACGTCCCACCGATACGTCATACATTGAAAAGGGGCTAAACATTGTTGGTTGGTTAAACTTTCTCGTCACAGAGAATCGACAACAAGAAATCGTTGACCTCCAGTGCGAGGGAATTCAAAGAGAGAGCCTTGATGCATTGCTTTCGATTGCCATCCAATGTGTTTCATCGAGCCCAGAGGAACGACCAACCATGCACAGAGTGGTTCAGATACTGGAATCTGAGGTTATGACTCCATGCCCAAGTGATTTCTATGATTCAGATTAA 1419 42.14 MFLQGNYFSGFIPNELGNLSALTSLDISSNSLGGNIPISLGKLSKLITLNVSANFLVGSIPNAGVLISFSESSFLGNRGLCGKQINVLCKDDKEGPGIKESPFSVQNELGRKKYSGRLLISALATVGALLLVALMCFWGCFLYKKFGKNDSKALVLDVCRGASGVMFHGDLPYSSKDIVKKFESLNEEHIIGCGGFGTVYKLAMDDGNAFALKRIVKLNEGFDRFFERELEILGSIKHRFLVNLRGYCNSPTSKLLIYDFLSGGSLDEALHGVRTEASEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDTSYIEKGLNIVGWLNFLVTENRQQEIVDLQCEGIQRESLDALLSIAIQCVSSSPEERPTMHRVVQILESEVMTPCPSDFYDSD 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17703873 17734220 + Sed0016626.1 Sed06g1062 717605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1062 472 Gene3D Transferase(Phosphotransferase) domain 1 261 464 - -
Sed06g1062 472 Gene3D Phosphorylase Kinase; domain 1 158 260 - -
Sed06g1062 472 SUPERFAMILY L domain-like 3 64 - -
Sed06g1062 472 ProSiteProfiles Protein kinase domain profile. 185 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1062 472 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 159 260 - -
Sed06g1062 472 Pfam Leucine Rich Repeat 22 43 IPR001611 GO:0005515(InterPro)
Sed06g1062 472 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 261 467 - -
Sed06g1062 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1062 472 Gene3D Ribonuclease Inhibitor 1 95 IPR032675 -
Sed06g1062 472 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 458 IPR050647 -
Sed06g1062 472 SUPERFAMILY Protein kinase-like (PK-like) 171 456 IPR011009 -
Sed06g1062 472 ProSitePatterns Protein kinases ATP-binding region signature. 191 217 IPR017441 GO:0005524(InterPro)
Sed06g1062 472 Pfam Protein kinase domain 187 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1062 472 SMART serkin_6 185 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1062 Sed-Chr6:17703873 Sed07g0946 Sed-Chr7:6925062 5.30E-197 dispersed
Sed06g1062 Sed-Chr6:17703873 Sed08g2570 Sed-Chr8:38220240 8.10E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79358 PF00069 Pkinase 9.40E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1062 - - - 0.0