Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1106 ATGAGATCAAGCGTTGATGAAGATGATAGGGAGTTAGCCATGGAGTCCGGAGAATCCGAGGAAGAAATAGTTGTTCAGGAAGTCTGTGCCAATGGGATCTCCATAAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATTGAAGAGGCAGAATCTTCATTACGGGAAGGGTTGTCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGAAAGTTGGAATATCAGAGAGGTAATGTTGAAGGTGCTCTACGTGTGTTTGATGGTATTGATCTCCAAGCAACTATTCAACGATTACAGCCTTGGATTGAGGAGAAGGCTCCTCCAAAAAAAGGACTTTCCCGCTCGGACTCTCAACATGCAGTTTCGCAGCATGCTGCAAACTTGGTGCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGAGAGAATAACTGGTAAGAAGGACCAATGTAATCTAGCCGCTACGGAATTCCCCGATGGGCAAGTGGATGGTAGATTGCAAGAGACCGCACACCAGCCAGTAGAACTCCTCCCCAAGCTATGGAAGCAAGCCGGCTCTTACGAGGAAGCAATATCTGCCTATAGGCGTGCCCTCTTAAACCAATGGAACCTCAACGATGAAACTTGTGCTAGGATTCAGAAAGGATTTACTGTGTTCTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTCTTCAACTTGAAGGTTCATATTGTCCAAAAAATAATTTGGCGAAACATGTTACCTTGCAAAACAACTTTGAAGAGGTCATGCCTGGAGTATATCACCGCGTAGATCGTTGGAAGTCTTTAGCTCTTTGCTATTGTGCAGCAGATCAGAACAAAGTTTCCTTGAATCTTTTGAGAAAGTCTCTACACAGACACGAGCAACCAAATGATGTAGCAGCTTTATTACTGGCTGCCAAGATTTGTAGTGAGGACCCTTATCTCGCTGCTGAAGGTGTTGAATACGCCCAACGGGCATTGAATAATTCTGTAGGAGATGAAGAGAATTTAAAGGGTGTGGGTCTACGCTTGTTAGGTCTTTGTTTGGGAAAACAAGCTAAAATGTCTTCCTTAGACTACGAGAGGTCCCGTCTTCAATCCGAGGCATTGAAATCTCTTGTTGCAGCAAGTGTTTTAGAGAGCAATAACTTAGATTTGTTCCTTGAGTTACAAAGACAACATCTGCAATATCGGAATTTGAATGTAGCTTTTCAATATGCAAAGAAGTTCATTGATGAAACCGGTGGCTCTTTGCTTGCTCTAGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAGGCAGTTACGGATGCTGCAATGGATGAGGCCACAAAATGGGAACAAGGACCACTTCTCAAGCTCAAGGCAACGCTGAAGATCTCCCAATCATTACATACGGATGCTATTGAACTTACCGTTTTCTCCTTGCATTACCAATTTATACTCCAGCCTTCACATTGGAAAGATGCAGAGATATGTTTAGGAAAAGCAAGAGAGCTGAAAGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATTTGTGAAGGACGTGAGAAAATACAGGAAGCTCTAGCTGCTTATATTAATGGTCTTCTACTTGAACCGGCTTATGTTCCTTGCAAGGTTTTGATCGGTGCTATTTGGTCGAAAGCGGGTCCGGATGCATTGCCTATAGCAAGGAGCTTACTTTCAGACGCGTTGAGATTAGATCCTACCAACCACTGCTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGCATTCTCTAG 1818 43.67 MRSSVDEDDRELAMESGESEEEIVVQEVCANGISIKTTEVEAKLDEGNIEEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQATIQRLQPWIEEKAPPKKGLSRSDSQHAVSQHAANLVLEAIYLKVKSLQKLERITGKKDQCNLAATEFPDGQVDGRLQETAHQPVELLPKLWKQAGSYEEAISAYRRALLNQWNLNDETCARIQKGFTVFLLYSGVEAGPPSLALQLEGSYCPKNNLAKHVTLQNNFEEVMPGVYHRVDRWKSLALCYCAADQNKVSLNLLRKSLHRHEQPNDVAALLLAAKICSEDPYLAAEGVEYAQRALNNSVGDEENLKGVGLRLLGLCLGKQAKMSSLDYERSRLQSEALKSLVAASVLESNNLDLFLELQRQHLQYRNLNVAFQYAKKFIDETGGSLLALVLSAQKRFSEAEAVTDAAMDEATKWEQGPLLKLKATLKISQSLHTDAIELTVFSLHYQFILQPSHWKDAEICLGKARELKEFSPEVLHTEGLICEGREKIQEALAAYINGLLLEPAYVPCKVLIGAIWSKAGPDALPIARSLLSDALRLDPTNHCFQAAAMLEESDPIESFSSIL 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30233045 30248904 + Sed0016808.1 Sed06g1106 717649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1106 605 MobiDBLite consensus disorder prediction 1 21 - -
Sed06g1106 605 SUPERFAMILY TPR-like 428 583 IPR011990 GO:0005515(InterPro)
Sed06g1106 605 Gene3D Tetratricopeptide repeat domain 184 589 IPR011990 GO:0005515(InterPro)
Sed06g1106 605 PANTHER PROTEIN NPG1 17 253 IPR043376 -
Sed06g1106 605 SUPERFAMILY TPR-like 44 417 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2427 Sed-Chr5:36611483 Sed06g1106 Sed-Chr6:30233045 1.70E-263 dispersed
Sed06g1106 Sed-Chr6:30233045 Sed10g1173 Sed-Chr10:19086778 2.80E-94 dispersed
Sed06g1106 Sed-Chr6:30233045 Sed06g1108 Sed-Chr6:30650843 4.80E-243 proximal
Sed05g2426 Sed-Chr5:36611483 Sed06g1106 Sed-Chr6:30233045 1.70E-263 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1106 K21843 - csv:101206641 894.034