Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1108 ATGAGATCAAGCGTTGATGAAGATGATAGGGAGTTAGCCATGGAGTCCGGAGAATCCGAGGAAGAAATAGTTGTTCAGGAAGTCTGTGCCAATGGGATCTCCATAAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATTGAAGAGGCAGAATCTTCATTACAGGAAGGTTGTCTCTCAATTTTGAGTTTATTCACTTACCACCATGAAGACATTATCGAAGCCAGAGCCCTTCTTGGAAAGTTGGAATATCAGAGAGGTAATGTTGAAGGTGCTCTACGTCCTTGGATTGAGAGAAGGCTCCTCCAAAAAGGACTTTCCCGCTCGGACTCTCAACATGCAGTTTCGCAGCATGCTGCAAACTTGGTGCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGAGAGAATAACTGGTAAGAAGGACCAATGTAATCTAGCCGTTCACGGGAATTCTGATGGGCAAGTGGATGGTAGATTGCAAGAGACTGTCAGTCAGGCTGTAGAACTCCTCCCCAAGCTATGGAAGCAAGCCGGCTCTTACGAGGAAGCAATATCTGCCTATAGGCGTGCCCTCTTAAACCAATGGAACCTCAACGATGAAACTTGTGCTAGGATTCAGAAAGGATTTACTGTTTTAGCTCTTCAACTTGAAGGTTCATATTGTCCAAAAAATAATTTGACATGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAACACCTAATATTTGCTCTATCCTTATGCAGCCAGACTTCTTCTTTAGCTCTTTGCTATTGTGCAGCAGATCAGAACAAAGTTTCCTTGAATCTTTTGAGAAAGTCTCTACACAGACACGAGCAACCAAATGATGTAGCAGCTTTATTACTGGCTGCCAAGATTTGTAGTGAGGACCCTTATCTCGCTGCTGAAGGTGTTGAATACGCCCAACGGGCATTGAATAATTCTGTAGGAGATGAAGAGAATTTAAAGGGTGTGGGTCTACGCTTGTTAGGTCTTTGTTTGGGAAAACAAGCTAAAATGTCTTCCTTAGACTACGAGAGGTCCCGTCTTCAATCCGAGGCATTGAAATCTCTTGTTGCAGCAAGTGTTTTAGAGAGCAATAACTTAGATTTGTTCCTTGAGTTGGCAGTACAACATTCAGAATATCGGAATTTGAATGTAGCTTTTCAATATGCAAAGAAGTTCATTGATGAAACCGGTGGCTCTTTGCTTGCTCTAGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAGGCAGTTACGGATGCTGCAATGGATGAGGCCACAAAATGGGAACAAGGACCACTTCTCAAGCTCAAGGCAACGCTGAAGATCTCCCAATCATTACATACGGATGCTATTGAACTTACCAAAATACAGGAAGCTCTAGCTGCTTATATTAATGGTCTTCTACTTGAACCGGCTTATGTTCCTTGCAAGGTTTTGATCGGTGCTATTTGGTCGAAAGCGGGTCCGGATGCATTGCCTATAGCAAGGAGCTTACTTTCAGACGCGTTGAGATTAGATCCTACCAACCGTAAGGCTTGGTTTTACTTAGGCGTGATCCATCGGGACGAAGGACGAATGGCCGATGCTATAGACTGCTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGCATTCTCTAG 1692 43.44 MRSSVDEDDRELAMESGESEEEIVVQEVCANGISIKTTEVEAKLDEGNIEEAESSLQEGCLSILSLFTYHHEDIIEARALLGKLEYQRGNVEGALRPWIERRLLQKGLSRSDSQHAVSQHAANLVLEAIYLKVKSLQKLERITGKKDQCNLAVHGNSDGQVDGRLQETVSQAVELLPKLWKQAGSYEEAISAYRRALLNQWNLNDETCARIQKGFTVLALQLEGSYCPKNNLTCYLGKIKWDPSVMEHLIFALSLCSQTSSLALCYCAADQNKVSLNLLRKSLHRHEQPNDVAALLLAAKICSEDPYLAAEGVEYAQRALNNSVGDEENLKGVGLRLLGLCLGKQAKMSSLDYERSRLQSEALKSLVAASVLESNNLDLFLELAVQHSEYRNLNVAFQYAKKFIDETGGSLLALVLSAQKRFSEAEAVTDAAMDEATKWEQGPLLKLKATLKISQSLHTDAIELTKIQEALAAYINGLLLEPAYVPCKVLIGAIWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSIL 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30650843 30667509 - Sed0002730.1 Sed06g1108 717651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1108 563 MobiDBLite consensus disorder prediction 1 21 - -
Sed06g1108 563 SUPERFAMILY TPR-like 71 402 IPR011990 GO:0005515(InterPro)
Sed06g1108 563 SMART tpr_5 521 554 IPR019734 GO:0005515(InterPro)
Sed06g1108 563 Pfam Tetratricopeptide repeat 505 548 - -
Sed06g1108 563 Gene3D Tetratricopeptide repeat domain 501 559 IPR011990 GO:0005515(InterPro)
Sed06g1108 563 ProSiteProfiles TPR repeat profile. 521 554 IPR019734 GO:0005515(InterPro)
Sed06g1108 563 PANTHER PROTEIN NPG1 17 463 IPR043376 -
Sed06g1108 563 Gene3D Tetratricopeptide repeat domain 40 499 IPR011990 GO:0005515(InterPro)
Sed06g1108 563 SUPERFAMILY TPR-like 464 555 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2426 Sed-Chr5:36611483 Sed06g1108 Sed-Chr6:30650843 8.40E-231 dispersed
Sed06g1108 Sed-Chr6:30650843 Sed10g1173 Sed-Chr10:19086778 2.90E-69 dispersed
Sed06g1106 Sed-Chr6:30233045 Sed06g1108 Sed-Chr6:30650843 4.80E-243 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1108 K21843 - csv:101206641 634.795