Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g1122 | ATGCCCGATTCCAAGCTTCGTGTTGTTGATCTTCTCGCTCTTTTCTCTGTGCTTCTTCTGCTCATTCCCTCCGTGATTGCAGCACAGTGTCCGTGTGACCAGGAACAGGACGATGGTGTTCGAAACAAATCCCTAGCCCTCACTTACAAATTCGTCGCCATTGCGGCCATTCTCGTCGCCGGCATCGTCGGAGTGTTTATTCCGATGCTCGGAAGGATTATTCCGGCCTTGAGTCCGGAGAAGGAGATTTTCTTCGTCATCAAAGCCTTCGCCGCCGGAGTGATTTTGGCCACCGGATTCATTCATATTCTTCCAGATGCGTACGACAGCCTGACCTCCTCGAAGCTGAAGGAGAATCCATGGGCTAAGTTTCCGTTCACCGGATTGATTGCTATGGTGGCCGCCATCGCCACTCTAATGGTGGATGCCGGTGCCAGCTCTTACTACACTCGCCTTCACCTCAAGAAGCCTCAGCCCGCCCAGGATGAAGAGCTCGGCGGCGCTCACGACGGCCATATTCATGTCCATGCCTCCTCCGCCGGGTCTCAGGCGGACATTCTCCGGCACCGAGTCATCTCCCAGGTACTGGAATTGGGGATAGTGGTACATTCTGTAATTATAGGAATTGGTTTGGGCGTTTCTGAAACTCCCAAAACAATTAGGCCTCTTGTTGCAGCCATTACTTTTCATCAGTTATTCGAAGGCATGGGCTTAGGAGGATGCATCGCTCAGGCAAAGTTCAAGAACAAGGCAGCACTGTTAATGGCACTTTTCTTTTGCTTGACAACCCCAATCGGGATAGCAATAGGGATTGGAGTAACCAAGACTTATGATGAAGATAGTCCGAAAGCACTTATAGTTGAGGGAATTCTAAATGCAGCCTCGGCTGGGATCTTGATCTACATGTCTCTGGTAGATCTTCTAGCAGCCGATTTTATGAACCCTAGAATGCAGAGCAATGGAAGACTTCAATTTTTTGCTAATGTTTCTCTGATTCTTGGAGCTGCTTTGATGTCTTTGATCGGTATATGGGCTTGA | 1038 | 49.42 | MPDSKLRVVDLLALFSVLLLLIPSVIAAQCPCDQEQDDGVRNKSLALTYKFVAIAAILVAGIVGVFIPMLGRIIPALSPEKEIFFVIKAFAAGVILATGFIHILPDAYDSLTSSKLKENPWAKFPFTGLIAMVAAIATLMVDAGASSYYTRLHLKKPQPAQDEELGGAHDGHIHVHASSAGSQADILRHRVISQVLELGIVVHSVIIGIGLGVSETPKTIRPLVAAITFHQLFEGMGLGGCIAQAKFKNKAALLMALFFCLTTPIGIAIGIGVTKTYDEDSPKALIVEGILNAASAGILIYMSLVDLLAADFMNPRMQSNGRLQFFANVSLILGAALMSLIGIWA | 345 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 31962100 | 31964578 | + | Sed0027194.1 | Sed06g1122 | 717665 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g1122 | 345 | PANTHER | ZINC/IRON TRANSPORTER | 43 | 344 | - | GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER) | |
| Sed06g1122 | 345 | Pfam | ZIP Zinc transporter | 48 | 341 | IPR003689 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro) | |
| Sed06g1122 | 345 | NCBIfam | ZIP zinc/iron transport family | 32 | 345 | IPR004698 | GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g1946 | Sed-Chr1:14472986 | Sed06g1122 | Sed-Chr6:31962100 | 1.70E-80 | dispersed | |
| Sed03g0317 | Sed-Chr3:1928973 | Sed06g1122 | Sed-Chr6:31962100 | 5.40E-38 | dispersed | |
| Sed05g1825 | Sed-Chr5:31858292 | Sed06g1122 | Sed-Chr6:31962100 | 1.30E-97 | dispersed | |
| Sed05g3780 | Sed-Chr5:45556015 | Sed06g1122 | Sed-Chr6:31962100 | 3.50E-57 | dispersed | |
| Sed06g1122 | Sed-Chr6:31962100 | Sed08g1768 | Sed-Chr8:32525130 | 2.60E-76 | dispersed | |
| Sed06g1122 | Sed-Chr6:31962100 | Sed08g1963 | Sed-Chr8:34085745 | 8.30E-91 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g1122 | K14709 | - | csv:101215851 | 507.679 |