Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1194 ATGTCTCGCCCACTTCCCAACAAGTCCAAGACGCTCGATAACAAATATATGCTGGGAGATGAGATCGGGAAAGGAGCCTATGGGCGAGTCTACAAAGGCTTGGATTTGGAGAATGGGGACTTTGTTGCTATTAAACAAGTTTCCTTGGAGAACATTGCTCAAGAGGACCTCAACATTATCATGCTAGAGATTGACTTACTGAAGAATTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTCTGAAAACAAAGACTCATCTTCACATAATACTCGAGTATGTGGAGAACGGATCACTTGCCAACATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCTGTTTATATTTCTCAGGTTTTGGAAGGCTTGGTTTATCTACATGAGCAGGGTGTTATTCATCGGGATATAAAGGGTGCGAACATACTGACAACCAAAGAGGGTCTTGTGAAACTTGCTGATTTTGGTGTTGCAACAAAATTAACAGAGGCTGATGTTAATACACATTCAGTTGTTGGAACTCCTTATTGGATGGCTCCTGAGGTAATTGAAATGTCAGGAGTTTGTGCTGCTTCTGACATATGGAGTGTTGGATGTACCGTGATTGAACTGCTTACGTGCTTACCTCCATATTATGATCTACAACCTATGCCCGCACTTTTTCGCATTGTACAGGATAAGCATCCTCCAATTCCGGATAGCCTATCACCAGATATTACTGATTTTTTACGTCAGTGCTTTAAGAAGGATGCCAGGCAAAGGCCTGATGCAAAAACGTTACTTTCTCATCCTTGGATACTAAACTGTCGTCGGGCTTTGCATTCTTCTCTTCGTCATAGTGGCACATTGAGAAACACTCAACAAGATGGATCAGCAGGAGCAGAAATTTCTAAAGGAGACAATCAAAACTCTTGTGAAAGCCCTACAACTGAGAGAAAGGAAGTTGCTGGTGATTTAAAAGCTGATTCAAGGAAGGAGCTGTCATCAGATGTTTCAACTGATACAAGCAAGTCCCAAAAACATTTTGTTGAAGGAGAAAGCCTAGAAGAAGATACTCTATTTGATCAAGTTCCTACCTTATCCATTCATGAAAGTTCATCTCTTCTAACTGGTTCTGGCAAACTTGCGACCTCTGAGTCAACTGAATTTTGTGAATCTCATGGTATAGCCCATGATGAAATGATAATGAATGGTGAAGTACAATCGGAAGAGTTAAGAAAAGATGCTTCTAGGAAACATGGGGAGAAAGAAACTTCTACAACATCTGGAAACAAATCATTTGGTTTTGAACCTAAAAGCCAAGAAAATAGTTTTCAAAAGGTATCGAAACTGTCCATTTCTTTAAAAGGAAATGAGCTGAGTAAATTTAGCGATAGTCCTGGAGATGCATCCTTAGATGATTTATTTCACCCTTTAGATAAGGTCCCCGGGGATCAAGCAGATGAAGCATCAACATCTCTATCTACCCCACAATCAAATATAGGTAATGTGCCAATCAATGATGTTGGAAAAAATGACCTGGCCACAAAGTTGAGGGCTACCATCGCTCAGAAACAAATGGAAAATGAAATGGGACAAGCAAATGGTGGTGGTGACCTGCTTCGACTAGTGATGGATGTTTTAAATGATGATGTTGATATTGATGGTTTGGTTTTTGATGAGAAGTTGCCTGGGGAGAACCTTTATCCTTTGCCGGCCGTTGAATTTGGAAGATTAGTTGGGTCATTGAGACCTGATGAACCGGAAGATATAATTGTTTCTGCTTGTCAAAAACTGATTGCCATCTTCCATCAAAGGCCTGAGCAGAAAATTGTTTATGTTACACAGCATGGTTTACTCCCATTGACGGAGTTACTTGAAGTTCCAAAAACTCGTATTATATGTTCAGTGCTCCAGCTTATAAATCAGATAGTTAAGGATAACGGTGACTTCCAAGAAAATGCATGCCTTGTTGGTCTAATTCCTCTGGTAATGGGCTTTGCGGTTCCTGATCGTCCTCGAGAAGTTCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGCCAATCAAGCTCTTTGACATTGCAAATGTTCGTTGCGTGCCGTGGAATACCTGTATTAGTAAGCTTCTTAGAGGCTGATTATGCAAAGTACAGGGAAATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTTATGCTCCAGCATTCTACTCTAAAAAATGGTTTTTGTCGCATAGCAGCAAAAAGTGGAATTTTGCTTAGGCTTATCAACACCCTCTACAGCTTAAATGAGGCAACTCGCTTAGCTTCTACAACGGTCGGGGTGGGAAATCCAGTTGATGGTTTAACTCAACGGCCACAATCAGGTCAACTAGATCCTAGCCACTCAATATTCAGTCAGTATGAGACCTCATTTCTTGTGTCTGATCAGCCTGATCTTTTAAAGATCAGGCATGAAATAGTTGATCATCATCTATCTACTGGAACACCAGAATCTTCTAGGGCTTCAACTTCACACTCTCAAAGATCAGATGCCAACCAATTCAATCATAGAGTTTTTTCCGCAGATGCTGATAGGCCTCAATCTAGCAATACCACAAATGAAGCGATGGGAACTTCTAAATTGTCAGAGCTAGCATCTTTCGAAAAAGTTGTAAATTTAGCAACCAAGGAACTATCTGGCTCTAATTCTAAAGAACATGAAAATGTAGATAGATGGAGAGCTGAGCGGATGGTCAATTCAAACAGGTCTTCCACAGATAGGCTTCCAAAATTGGTGGAACCTGCATCTAATGGATTCCCTACAGTATCAGTGGCTACTCAACAAGAGCAAGTTAGGCCCCTGCTAAGTTTGTTGGACAAAGAACCCCCTTCTCGACATTTTTCTGGTCAGCTAGAGTACATGCGCCAACTTTCTGGATTAGAGAGACATGAAACTATAATGCCTCTATTGCATGCATCAAAGGAAAAGAAGATAAATGGGGAGCCTGATTTCTTAATGGCAGAATTCGCTGAGGTTTCTCAACGTGGAAAAGACAATGGAAATCTTGACCCCACTTCTAAAGTTTCCCTTAAATCAGTGGCAAAAAAGGTGGGATCCCTAATGTCCAATGAAGGAGCTGCTTCCACATCTGGAATTGCTTCACAGACAGCATCTGGGGTACTTTCAGGATCGGGCGTATTAAATGCTAGACCGGGTAGTGCAACATCCTCTGGACTTCTTTCCAACATGGTTTCAACTATGAACGCTGATATTGCAAAGGAATACCTGGAGAAGGTGGCTGATCTTCTGCTTGAGTTTGCTCAGGCAGATACAACGGTGAAATCATTTATGTGCAGCCAAAGCTTGCTTAATCGCCTTTTCCAGATGTTCAATAGGGTAGAGCCCCCAATTCTCTTAAAGATATTGAAATGCATAAATCATCTATCAACAGATCCGAACTGCTTAGAAAATCTTCAGCGAGCTGATGCCATTAAATATTTGATTCCAAACCTTGAACTCAAGGAAGGGTGTCTGGTATCGCAAATACATACTGAGGTCCTCAGTGCACTATTCAATTTGTGCAAGATAAATAAGAGGAGACAAGAATATGCTGCTGAAAATGGAATTATTCCACACTTGATGCATTTTATTATATCAGACTCTCCTCTTAAAAAAGATGCATTACCTCTACTGTGTGATATGGCTCATGCGTCTCGTAATTCTCGAGAGCAGTTAAGAGCCCACGGTGGATTAGATGTGTATTTGAGCCTACTTGAAGATGGGCTTTGGTCTGTCACGGCATTGGATTCTATTGCTGTTTGCTTGGCTCATGACAATGACAACCGAAAAGTTGAACAGGCTTTGCTGAAAAAGGATGCAGTTCAAAAATTGGTGAAATTTTTCCAGTGCTGTCCAGAACAACATTTTGTGCATATATTGGAGCCCTTCTTGAAAATCATCACAAAATCTCCACGAATCAATACGACATTGGCTGTCAATGGATTGACCCCATTGCTTATAGCAAGACTGGACCATCAGGATGCAATTGCTCGGCTTAATCTTCTTAAACTGATAAAGGCTGTGTATGAGCATCATCCGCGACCCAAACAATTGATTGTGGAAAATAATTTACCTCAAAAACTTCAGAATCTGATTGAGGAACGCAGAGATGGACAGCGCTCTGGTGGCCAAGTGTTGGTCAAACAAATGGCCACATCTTTGCTCAAAGCACTTCATATCAATACCGTTTTGTAA 4233 40.94 MSRPLPNKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMLEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCLPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWILNCRRALHSSLRHSGTLRNTQQDGSAGAEISKGDNQNSCESPTTERKEVAGDLKADSRKELSSDVSTDTSKSQKHFVEGESLEEDTLFDQVPTLSIHESSSLLTGSGKLATSESTEFCESHGIAHDEMIMNGEVQSEELRKDASRKHGEKETSTTSGNKSFGFEPKSQENSFQKVSKLSISLKGNELSKFSDSPGDASLDDLFHPLDKVPGDQADEASTSLSTPQSNIGNVPINDVGKNDLATKLRATIAQKQMENEMGQANGGGDLLRLVMDVLNDDVDIDGLVFDEKLPGENLYPLPAVEFGRLVGSLRPDEPEDIIVSACQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRIICSVLQLINQIVKDNGDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYREMVHLAIDGMWQIFMLQHSTLKNGFCRIAAKSGILLRLINTLYSLNEATRLASTTVGVGNPVDGLTQRPQSGQLDPSHSIFSQYETSFLVSDQPDLLKIRHEIVDHHLSTGTPESSRASTSHSQRSDANQFNHRVFSADADRPQSSNTTNEAMGTSKLSELASFEKVVNLATKELSGSNSKEHENVDRWRAERMVNSNRSSTDRLPKLVEPASNGFPTVSVATQQEQVRPLLSLLDKEPPSRHFSGQLEYMRQLSGLERHETIMPLLHASKEKKINGEPDFLMAEFAEVSQRGKDNGNLDPTSKVSLKSVAKKVGSLMSNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSNMVSTMNADIAKEYLEKVADLLLEFAQADTTVKSFMCSQSLLNRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGCLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKKDALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDGLWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSPRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENNLPQKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34931060 34972420 - Sed0020503.1 Sed06g1194 717737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1194 1410 MobiDBLite consensus disorder prediction 485 503 - -
Sed06g1194 1410 MobiDBLite consensus disorder prediction 284 314 - -
Sed06g1194 1410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1194 1410 SMART serkin_6 16 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1194 1410 FunFam MAP3K epsilon protein kinase 1 565 773 - -
Sed06g1194 1410 FunFam MAP3K epsilon protein kinase 1 13 302 - -
Sed06g1194 1410 SUPERFAMILY ARM repeat 576 1297 IPR016024 -
Sed06g1194 1410 SUPERFAMILY ARM repeat 1268 1383 IPR016024 -
Sed06g1194 1410 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 584 1410 IPR052441 -
Sed06g1194 1410 FunFam MAP3K epsilon protein kinase 1-like 1059 1405 - -
Sed06g1194 1410 Gene3D - 570 772 IPR011989 -
Sed06g1194 1410 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Sed06g1194 1410 MobiDBLite consensus disorder prediction 824 844 - -
Sed06g1194 1410 MobiDBLite consensus disorder prediction 407 438 - -
Sed06g1194 1410 MobiDBLite consensus disorder prediction 407 423 - -
Sed06g1194 1410 MobiDBLite consensus disorder prediction 825 844 - -
Sed06g1194 1410 MobiDBLite consensus disorder prediction 315 348 - -
Sed06g1194 1410 MobiDBLite consensus disorder prediction 461 505 - -
Sed06g1194 1410 Gene3D - 1262 1408 IPR011989 -
Sed06g1194 1410 PRINTS Tyrosine kinase catalytic domain signature 130 148 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1194 1410 PRINTS Tyrosine kinase catalytic domain signature 92 105 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1194 1410 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1194 1410 PRINTS Tyrosine kinase catalytic domain signature 196 218 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1194 1410 Gene3D Transferase(Phosphotransferase) domain 1 13 309 - -
Sed06g1194 1410 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1194 1410 CDD STKc_Cdc7_like 15 270 - -
Sed06g1194 1410 Pfam Protein kinase domain 16 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1194 1410 MobiDBLite consensus disorder prediction 424 438 - -
Sed06g1194 1410 SUPERFAMILY Protein kinase-like (PK-like) 13 271 IPR011009 -
Sed06g1194 1410 SMART arm_5 1190 1229 IPR000225 GO:0005515(InterPro)
Sed06g1194 1410 SMART arm_5 603 643 IPR000225 GO:0005515(InterPro)
Sed06g1194 1410 SMART arm_5 1144 1188 IPR000225 GO:0005515(InterPro)
Sed06g1194 1410 MobiDBLite consensus disorder prediction 284 348 - -
Sed06g1194 1410 Gene3D - 1033 1261 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1194 Sed-Chr6:34931060 Sed08g1693 Sed-Chr8:32027785 3.40E-58 dispersed
Sed06g1194 Sed-Chr6:34931060 Sed06g1197 Sed-Chr6:35021960 8.30E-28 proximal
Sed05g1300 Sed-Chr5:25162172 Sed06g1194 Sed-Chr6:34931060 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79360 PF00069 Pkinase 1.10E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1194 - - - 0.0