Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1210 ATGGAGACTGGATATGGAGGGGAAGCTTGTGAATTGTATGGTATGGGGTCTGTGGGCTTGAGGGCTGCTGTTGGGAAGAGTAGTCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTGTTTATTGCTAGGCCTTTGAATACGGTGGAATCTGATCAATTGAGCAGGCAGGTTTTTCCGATCGTCTCCGCGATCGGAGCTTCGTCCAACACTTCCTCATCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGACAAGAGGAGGAGGGTTGCTGTTGTTGAAGATGAGAATCTTAATGTACAGGCTCGTACTTTGAGTTTGAAGGTGGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGCAGGGAATTGGGAAGGAACTAGTGGGAAGAAGGCTAAATTGGCTGGGGGAAATTCGAATCGTGCCGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCTAAAGATTACCATAGGCGACATAAAGTATGCGAAACGCATTCAAAGGCGAGTAATGCCCTTGTTGCAAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAGCGAAGTTGTCGTAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAGTTAATCCAGATAATGCTGTTAATGGAAATTCTCCACCTGATGAGCAGACTAGTAGTTATTTATTGTTAACTCTGTTGCGAATACTTGCAAATTTGCACACCAATGGATCAAATCAGACCACAGATCAAGATCTTCTTTCTCATCTTATACGAAGCCTTGCTTGTCAGTCTAGCGAGCATGGAGGGAAAAATCTACCTGGGATTTTGCATGAACATCAGAATTTGCTGAGCAACGGGGCATTGATTGGGAAATCAGATATAGTTTCTGCTTTTCTTTCAAATGGTCCTCAGGTACCTTCGAGACCTTCTAAACAACATGACACTGTACCAATGTCTGAGATACCAGTACAAGGAATTGTTAGGGGTGGAAATACGCCAGCTATATATTCTATAAAACCAAGCACCTCGAATAGCCCACCCGCTTATTCAGAAATCCGGGACAGTGCAGTTGGGCAATGCAAAATGGTGAACTTTGATTTGAACGATGCTTATATTGACTCAGACGATGGAATGGAAGACATTGAGAGACATGTAGTCCCGGTGCACGTGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAATCAAGCCCCCCTCAAACTAGCGGAAATTCAGATTCCGCGTCTGCCCAATCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGTACAGATCGCATCATTTTTAAATTGTTTGGGAAAGCACCAAATGATTTTCCCCACGTTTTGCGAGCACAGGTTCTTGATTGGTTATCGCACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGACAGACCGAGACTGCATGGGACGATCTTTGCCATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGATTCGGACGATGCTTTCTGGAGAACTGGATGGATTTACATGCGGGCTCAGCATCAAATAGCTTTCGTTTATCATGGTCAGGTTGTAGTTGACACATCCTTGCCTCTTAGAAACAAGAATTACTCTAGAATCACAAGTGTAAACCCCGTTGCCGTTTCCATATCTAAGAAGGCTATGTTTTCCGTTAAAGGGATAAACTTGAGCCAACCTACAACTAGGCTACTCTGTGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAATCAACAGAAAGTGGCAATAACTTGAAGGCGCAACAGGACAGCGAATTTGTTACCTTTTCTTGCTCTATTCCTGTCGTCTATGGAAGAGGATTCATTGAGGTTGAAGATGATGGTTTCAGCAGCAGTTTCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTACAGAGATCTGCACACTTCAGAGTGCTCTAGAATTTTCTGAGACGTGTTCAAATTCCGGAGAAACTACAGAGCTGGAAGGAAGGAGTAGTGCAATGGAGTTTATTCACGAAATTGGTTGGCTATTTCATAGAAATCAGTTGAAGTCTAGATTAGGTCACTTGGATCCTAGTGAAAATCACTTTTCACTACCGCGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAACTGTTGGATGTTCTTCTCGATGGGTCCGTGGATGTAGGAAACCACCCATCCTTGAATTTCGCATTGATGGAAATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGTACGCCACTGGTGGAGCTTCTTTTGAGATATCCTTTAAAAGTGAAGGATACATCTAGTTCTGAAGACACTGCATCCATTGATGGAGGAACTAGCAGCTTCATGTTTAGACCTGATGTCGTAGGCCCGGCCGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGCTGCATTAACTAATGACCCGGAAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCGACACCTGAGGATTATGCCCATTTGCGTGGCCATTACTCTTATATTCGCCTTGTCCAGAGGAAGATCAACAAGAGATCTGCAGCAGGGCATGTAGTGCTGGATATTCCCAGTACACTCTCAGATGGTGGCTTGAATCAGAAGCAGAACACTGACTTGACCTCCTCCAGGTTTGAGATTGGTAGAACAGAACTAAAACCTACTCAGCAAAATTGCAGGCTGTGTGTTAGGAAACCCCTCGGCTGTGGAGCGGCGTCTAGGTCTAATGCGTCTCTGGTCTACCGGCCCGCAATGCTTTCAATGGTAGCCATTGCTGCTGTCTGTGTGTGCGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTTCTTTATGTTTTCCGCCCCTTCCAATGGGAACTATTACATTATGGTACCAGTTAA 3042 45.04 METGYGGEACELYGMGSVGLRAAVGKSSLEWDLNDWKWDGDLFIARPLNTVESDQLSRQVFPIVSAIGASSNTSSSCSDEANMGIEKGKREVDKRRRVAVVEDENLNVQARTLSLKVGGNGSQIVEREAAGNWEGTSGKKAKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKVNPDNAVNGNSPPDEQTSSYLLLTLLRILANLHTNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLPGILHEHQNLLSNGALIGKSDIVSAFLSNGPQVPSRPSKQHDTVPMSEIPVQGIVRGGNTPAIYSIKPSTSNSPPAYSEIRDSAVGQCKMVNFDLNDAYIDSDDGMEDIERHVVPVHVGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIIFKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTETAWDDLCHDLSTSLNRLLDDSDDAFWRTGWIYMRAQHQIAFVYHGQVVVDTSLPLRNKNYSRITSVNPVAVSISKKAMFSVKGINLSQPTTRLLCAIEGKYLTQEASDESTESGNNLKAQQDSEFVTFSCSIPVVYGRGFIEVEDDGFSSSFFPFIVAEEDVCTEICTLQSALEFSETCSNSGETTELEGRSSAMEFIHEIGWLFHRNQLKSRLGHLDPSENHFSLPRFKWLMEFSMDHDWCAVVKKLLDVLLDGSVDVGNHPSLNFALMEMSLLHRAVRKNSTPLVELLLRYPLKVKDTSSSEDTASIDGGTSSFMFRPDVVGPAGLTPLHIAAGKDDSEDVLAALTNDPEMVGVEAWKSARDSTGSTPEDYAHLRGHYSYIRLVQRKINKRSAAGHVVLDIPSTLSDGGLNQKQNTDLTSSRFEIGRTELKPTQQNCRLCVRKPLGCGAASRSNASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFQWELLHYGTS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35332529 35339814 + Sed0010875.1 Sed06g1210 717753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1210 1013 MobiDBLite consensus disorder prediction 418 452 - -
Sed06g1210 1013 Gene3D - 736 900 IPR036770 -
Sed06g1210 1013 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677(InterPro)
Sed06g1210 1013 MobiDBLite consensus disorder prediction 217 241 - -
Sed06g1210 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1008 IPR044817 GO:0003677(InterPro)
Sed06g1210 1013 SUPERFAMILY SBT domain 151 232 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed06g1210 1013 Gene3D - 144 214 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed06g1210 1013 FunFam Squamosa promoter-binding-like protein 14 144 214 - -
Sed06g1210 1013 Pfam SBP domain 153 226 IPR004333 GO:0003677(InterPro)
Sed06g1210 1013 SUPERFAMILY Ankyrin repeat 778 893 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1210 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1210 Sed-Chr6:35332529 Sed13g1193 Sed-Chr13:16093551 5.20E-117 dispersed
Sed05g1290 Sed-Chr5:24873726 Sed06g1210 Sed-Chr6:35332529 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g1290 . 181 1014 SBP-box Gene Family AT2G47070 55.2 3.6e-240 828.9
Sed06g1210 . 178 1013 SBP-box Gene Family AT2G47070 55.4 7.6e-238 821.2
Sed05g1290 . 25 1014 SBP-box Gene Family AT3G60030 53.8 1.6e-274 943.3
Sed06g1210 . 25 1013 SBP-box Gene Family AT3G60030 53.9 2.9e-271 932.6
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed02g0344 . 2 146 SBP-box Gene Family AT5G43270 54.6 1.4e-36 151.8
Sed05g1290 . 181 1014 SBP-box Gene Family AT2G47070 55.2 3.6e-240 828.9
Sed06g1210 . 178 1013 SBP-box Gene Family AT2G47070 55.4 7.6e-238 821.2
Sed02g0344 . 2 146 SBP-box Gene Family AT5G43270 54.6 1.4e-36 151.8
Sed05g1290 . 25 1014 SBP-box Gene Family AT3G60030 53.8 1.6e-274 943.3
Sed06g1210 . 25 1013 SBP-box Gene Family AT3G60030 53.9 2.9e-271 932.6
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50670 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50670 58.1 1.3e-38 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38872 PF03110 SBP 1.00E-29 No_clan Sed TF