Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1210 ATGGAGACTGGATATGGAGGGGAAGCTTGTGAATTGTATGGTATGGGGTCTGTGGGCTTGAGGGCTGCTGTTGGGAAGAGTAGTCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTGTTTATTGCTAGGCCTTTGAATACGGTGGAATCTGATCAATTGAGCAGGCAGGTTTTTCCGATCGTCTCCGCGATCGGAGCTTCGTCCAACACTTCCTCATCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGACAAGAGGAGGAGGGTTGCTGTTGTTGAAGATGAGAATCTTAATGTACAGGCTCGTACTTTGAGTTTGAAGGTGGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGCAGGGAATTGGGAAGGAACTAGTGGGAAGAAGGCTAAATTGGCTGGGGGAAATTCGAATCGTGCCGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCTAAAGATTACCATAGGCGACATAAAGTATGCGAAACGCATTCAAAGGCGAGTAATGCCCTTGTTGCAAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAGCGAAGTTGTCGTAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAGTTAATCCAGATAATGCTGTTAATGGAAATTCTCCACCTGATGAGCAGACTAGTAGTTATTTATTGTTAACTCTGTTGCGAATACTTGCAAATTTGCACACCAATGGATCAAATCAGACCACAGATCAAGATCTTCTTTCTCATCTTATACGAAGCCTTGCTTGTCAGTCTAGCGAGCATGGAGGGAAAAATCTACCTGGGATTTTGCATGAACATCAGAATTTGCTGAGCAACGGGGCATTGATTGGGAAATCAGATATAGTTTCTGCTTTTCTTTCAAATGGTCCTCAGGTACCTTCGAGACCTTCTAAACAACATGACACTGTACCAATGTCTGAGATACCAGTACAAGGAATTGTTAGGGGTGGAAATACGCCAGCTATATATTCTATAAAACCAAGCACCTCGAATAGCCCACCCGCTTATTCAGAAATCCGGGACAGTGCAGTTGGGCAATGCAAAATGGTGAACTTTGATTTGAACGATGCTTATATTGACTCAGACGATGGAATGGAAGACATTGAGAGACATGTAGTCCCGGTGCACGTGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAATCAAGCCCCCCTCAAACTAGCGGAAATTCAGATTCCGCGTCTGCCCAATCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGTACAGATCGCATCATTTTTAAATTGTTTGGGAAAGCACCAAATGATTTTCCCCACGTTTTGCGAGCACAGGTTCTTGATTGGTTATCGCACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGACAGACCGAGACTGCATGGGACGATCTTTGCCATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGATTCGGACGATGCTTTCTGGAGAACTGGATGGATTTACATGCGGGCTCAGCATCAAATAGCTTTCGTTTATCATGGTCAGGTTGTAGTTGACACATCCTTGCCTCTTAGAAACAAGAATTACTCTAGAATCACAAGTGTAAACCCCGTTGCCGTTTCCATATCTAAGAAGGCTATGTTTTCCGTTAAAGGGATAAACTTGAGCCAACCTACAACTAGGCTACTCTGTGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAATCAACAGAAAGTGGCAATAACTTGAAGGCGCAACAGGACAGCGAATTTGTTACCTTTTCTTGCTCTATTCCTGTCGTCTATGGAAGAGGATTCATTGAGGTTGAAGATGATGGTTTCAGCAGCAGTTTCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTACAGAGATCTGCACACTTCAGAGTGCTCTAGAATTTTCTGAGACGTGTTCAAATTCCGGAGAAACTACAGAGCTGGAAGGAAGGAGTAGTGCAATGGAGTTTATTCACGAAATTGGTTGGCTATTTCATAGAAATCAGTTGAAGTCTAGATTAGGTCACTTGGATCCTAGTGAAAATCACTTTTCACTACCGCGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAACTGTTGGATGTTCTTCTCGATGGGTCCGTGGATGTAGGAAACCACCCATCCTTGAATTTCGCATTGATGGAAATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGTACGCCACTGGTGGAGCTTCTTTTGAGATATCCTTTAAAAGTGAAGGATACATCTAGTTCTGAAGACACTGCATCCATTGATGGAGGAACTAGCAGCTTCATGTTTAGACCTGATGTCGTAGGCCCGGCCGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGCTGCATTAACTAATGACCCGGAAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCGACACCTGAGGATTATGCCCATTTGCGTGGCCATTACTCTTATATTCGCCTTGTCCAGAGGAAGATCAACAAGAGATCTGCAGCAGGGCATGTAGTGCTGGATATTCCCAGTACACTCTCAGATGGTGGCTTGAATCAGAAGCAGAACACTGACTTGACCTCCTCCAGGTTTGAGATTGGTAGAACAGAACTAAAACCTACTCAGCAAAATTGCAGGCTGTGTGTTAGGAAACCCCTCGGCTGTGGAGCGGCGTCTAGGTCTAATGCGTCTCTGGTCTACCGGCCCGCAATGCTTTCAATGGTAGCCATTGCTGCTGTCTGTGTGTGCGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTTCTTTATGTTTTCCGCCCCTTCCAATGGGAACTATTACATTATGGTACCAGTTAA 3042 45.04 METGYGGEACELYGMGSVGLRAAVGKSSLEWDLNDWKWDGDLFIARPLNTVESDQLSRQVFPIVSAIGASSNTSSSCSDEANMGIEKGKREVDKRRRVAVVEDENLNVQARTLSLKVGGNGSQIVEREAAGNWEGTSGKKAKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKVNPDNAVNGNSPPDEQTSSYLLLTLLRILANLHTNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLPGILHEHQNLLSNGALIGKSDIVSAFLSNGPQVPSRPSKQHDTVPMSEIPVQGIVRGGNTPAIYSIKPSTSNSPPAYSEIRDSAVGQCKMVNFDLNDAYIDSDDGMEDIERHVVPVHVGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIIFKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTETAWDDLCHDLSTSLNRLLDDSDDAFWRTGWIYMRAQHQIAFVYHGQVVVDTSLPLRNKNYSRITSVNPVAVSISKKAMFSVKGINLSQPTTRLLCAIEGKYLTQEASDESTESGNNLKAQQDSEFVTFSCSIPVVYGRGFIEVEDDGFSSSFFPFIVAEEDVCTEICTLQSALEFSETCSNSGETTELEGRSSAMEFIHEIGWLFHRNQLKSRLGHLDPSENHFSLPRFKWLMEFSMDHDWCAVVKKLLDVLLDGSVDVGNHPSLNFALMEMSLLHRAVRKNSTPLVELLLRYPLKVKDTSSSEDTASIDGGTSSFMFRPDVVGPAGLTPLHIAAGKDDSEDVLAALTNDPEMVGVEAWKSARDSTGSTPEDYAHLRGHYSYIRLVQRKINKRSAAGHVVLDIPSTLSDGGLNQKQNTDLTSSRFEIGRTELKPTQQNCRLCVRKPLGCGAASRSNASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFQWELLHYGTS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35332529 35339814 + Sed0010875.1 Sed06g1210 717753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1210 1013 MobiDBLite consensus disorder prediction 418 452 - -
Sed06g1210 1013 Gene3D - 736 900 IPR036770 -
Sed06g1210 1013 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677(InterPro)
Sed06g1210 1013 MobiDBLite consensus disorder prediction 217 241 - -
Sed06g1210 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1008 IPR044817 GO:0003677(InterPro)
Sed06g1210 1013 SUPERFAMILY SBT domain 151 232 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed06g1210 1013 Gene3D - 144 214 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed06g1210 1013 FunFam Squamosa promoter-binding-like protein 14 144 214 - -
Sed06g1210 1013 Pfam SBP domain 153 226 IPR004333 GO:0003677(InterPro)
Sed06g1210 1013 SUPERFAMILY Ankyrin repeat 778 893 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1210 Sed-Chr6:35332529 Sed13g1193 Sed-Chr13:16093551 5.20E-117 dispersed
Sed05g1290 Sed-Chr5:24873726 Sed06g1210 Sed-Chr6:35332529 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38872 PF03110 SBP 1.00E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1210 - - - 0.0