Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1212 ATGGCAGCCATGACTCTTTCATCTCCCTTCATTGGAAAAGCTGTTCCTTTGAATGCACCGACCGAGCTGGCCCCCGCGGTTCGCAGCCCATGGTATGGTCCCGACCGTGTTAAGTACCTTGGACCATTCTCTGGTGAGCCTCCATCTTACCTTACAGGAGAGTTCCCCGGTGACTATGGTTGGGATACCGCAGGTCTATCAGCCGACCCTGAGACCTTTTCTAAGAACCGAGAGCTTGAAGTGATTCACAGTAGATGGGCCATGCTTGGAGCTCTAGGATGTGTGTTCCCAGAGCTACTTTCCAGGAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAAATCTTCAGTGAGGGTGGCCTCGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAAAGCATTTTGGCCATTTGGGCAAGTCAAGTAGTTCTCATGGGTGCAGTTGAAGGTTATCGTATTGCCGGAGGACCTCTTGGAGAAATTACCGATCCCATCTACCCAGGCGGTAGCTTTGACCCACTCGGGCTGGCCGACGATCCAGAGGCATTTGCAGAGCTCAAGGTGAAAGAACTCAAGAACGGCCGTCTTGCAATGTTTTCCATGTTTGGGTTCTTCGTGCAGGCCATTGTTACAGGAAAAGGTCCTTTGGAGAACCTTGCTGATCATCTTGCTGATCCTGTCAACAACAATGCGTGGTCTTATGCTACCAACTTTGTACCTGGGAAGTGA 744 50.4 MAAMTLSSPFIGKAVPLNAPTELAPAVRSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35380465 35381259 + Sed0027151.1 Sed06g1212 717755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1212 247 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 25 247 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed06g1212 247 Gene3D Chlorophyll a/b binding protein domain 38 240 - -
Sed06g1212 247 Pfam Chlorophyll A-B binding protein 47 214 IPR022796 -
Sed06g1212 247 FunFam Chlorophyll a-b binding protein, chloroplastic 38 240 - -
Sed06g1212 247 SUPERFAMILY Chlorophyll a-b binding protein 30 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1212 Sed-Chr6:35380465 Sed10g0156 Sed-Chr10:961812 1.50E-126 dispersed
Sed05g1288 Sed-Chr5:24810107 Sed06g1212 Sed-Chr6:35380465 8.20E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1212 K08912 - csv:101203342 475.322