Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1217 ATGGAGGAAACTTTTGTTCCTTTACGTGGAATCAAGAATGACCTGAAAGGGAGGTTACTGTGTTACAAACAAGACTGGACTGGTGGATTCAGAGCTGGATATAGGATTTTGGCTCCCACTACTTACATATTCTTTGCCTCTGCAATTCCTGTCATTTCATTTGGTGAACAGTTGGAGAGAAATACTGATGGGGTGCTAACTGCAGTTCAAACCTTAGCCTCCACAGCTCTATGTGGAATCATTCACTCCATTATTGGAGGTCAACCTTTGCTAATCTTGGGAGTTGCTGAGCCTACTGTTATTATGTACACCTTCATGTTTAATTTTGCCAAGGAACGGCCCGAATTGGGTCGGAATCTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATCTTAGGAGCTTGCTCCATCATCAATAGATTCACTCGTCTGGCCGGTGAATTGTTCGGATTGCTTATTGCGATGCTTTTCATGCAGCAAGCTGTTAAAGGACTTGTGGACGAGTTTCGCATCCCAGAGCGAGAAAATGGGAAATTGATCGAGTTTATACCTTCTTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTGTCATTTGGCCTTCTACTCACTGCTTTAAGGAGTCGAAAGGCACGGTCTTGGCGATATGGATCTGGTTGGCTCAGAAGCTTGATAGCAGACTACGGAGTGCCGCTCATGGTTCTTGTTTGGACAGGTGTTTCCTATATACCTACGAAAAGTGTTCCAGAAGGAATCCCAAGGCGGCTCTTCAGCCCGAATCCATGGTCTCCCGGTGCGTATGACAATTGGACTGTTATCAAGGATATGCTTGACGTTCCAGTTTTTTATATATGTGGAGCTTTCATCCCGGCTACGATGATTGCGGTGCTGTACTATTTCGACCATAGTGTTGCATCACAACTTGCTCAGCAGAAAGAGTTCAATTTGAGGAAACCATCTTCTTACCATTATGATTTACTTCTATTGGGGTTCTTGACATTACTATGTGGTCTTCTTGGAATTCCTCCATCCAATGGAGTCATCCCACAGTCTCCAATGCATACAAAGAGCCTGGCTACTCTCAAACACCAGTTGCTGCGGAATAAGCTCGTAGAAAGGGCACGGAGTAGTATGCGAAAGAATGCTAGCCTTGGACAGTTGTATGGAAGTATGCAAGAAGCATACCAACAAATGCAGACTCCCCTGATCTACCAGCAGCCTGCAGTTCGTGGACTGAATGAGCTAAAAGAGACAACCATTCAAGCAGCTTCTAGTATGGGAAGTTTCGATGCTCCAGTCGATGAGACTGTATTCGACATAGAAAAGGAAATTGATGATCTATTGCCTGTTGAGGTGAAAGAACAGCGTGTCAGTAATTTGCTTCAAGCTGCAATGGTAGGAGGATGTGTTGCAGCCATGCCGGTTCTGAAAAAGATCCCGACCTCGGTTCTATGGGGTTACTTCGCCTTTATGGCCATCGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTACTCTTCACTGCACCAAGCAGAAGATTCAAAGTTCTTGAGGATTACCACGCGACTTTCGTCGAAACCGTGCCATTCAAATCCATTGTACTTTTTACCATTTTCCAAACTGTATATTTGTTCATATGTTTTGGACTAACATGGGTTCCTATAGCTGGGGTCATGTTTCCTCTGATGATCATGCTCCTCATCCCGGTTCGACAATACCTTCTTCCCAAGTTCTTCAAAGGCGCACATCTCCAAGATCTCGACGCAGCTGAATATGAAGAAGCACCAGCTTTACCGTTCAATCTTGCAACGGAAGCCGAGCTGGGTGCCGGGGCCTCATTTGGTGGGGATGGAGAGATTTTAGACGAGGTTATCACCCGTAGCCGTGGCGAGTTTAGGCATATTAATAGTCCTAAGATCACAAGCTCAACGGCAACACCAGCACATGACCGAAAAAGTTTTGACAGCCCTCACAGCTCTTTTAGCCCTCGGGTGAGCGAGCTAAAAGGAGAGCTCAGTCCTCGAGCAGGGGGACGAGGAACACCGGGTCAGAGAAGTGCAGAAGCTAAACCATCTGGTCTGGGAAAGAGCCCTCTTAATAACAACACAGCATCAAAGTAG 2157 45.9 MEETFVPLRGIKNDLKGRLLCYKQDWTGGFRAGYRILAPTTYIFFASAIPVISFGEQLERNTDGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQQAVKGLVDEFRIPERENGKLIEFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGWLRSLIADYGVPLMVLVWTGVSYIPTKSVPEGIPRRLFSPNPWSPGAYDNWTVIKDMLDVPVFYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLLCGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVERARSSMRKNASLGQLYGSMQEAYQQMQTPLIYQQPAVRGLNELKETTIQAASSMGSFDAPVDETVFDIEKEIDDLLPVEVKEQRVSNLLQAAMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRFKVLEDYHATFVETVPFKSIVLFTIFQTVYLFICFGLTWVPIAGVMFPLMIMLLIPVRQYLLPKFFKGAHLQDLDAAEYEEAPALPFNLATEAELGAGASFGGDGEILDEVITRSRGEFRHINSPKITSSTATPAHDRKSFDSPHSSFSPRVSELKGELSPRAGGRGTPGQRSAEAKPSGLGKSPLNNNTASK 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35437882 35442359 - Sed0004630.1 Sed06g1217 717760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1217 718 Pfam HCO3- transporter integral membrane domain 201 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed06g1217 718 Pfam HCO3- transporter integral membrane domain 8 179 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed06g1217 718 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed06g1217 718 PANTHER ANION EXCHANGE PROTEIN 5 639 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0046715(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Sed06g1217 718 FunFam probable boron transporter 2 18 60 - -
Sed06g1217 718 Gene3D Helical hairpin bin 18 60 - -
Sed06g1217 718 MobiDBLite consensus disorder prediction 648 662 - -
Sed06g1217 718 MobiDBLite consensus disorder prediction 648 718 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1467 Sed-Chr5:28389525 Sed06g1217 Sed-Chr6:35437882 2.30E-217 dispersed
Sed06g1217 Sed-Chr6:35437882 Sed06g2136 Sed-Chr6:45177084 1.20E-216 dispersed
Sed06g1217 Sed-Chr6:35437882 Sed06g1218 Sed-Chr6:35437882 3.10E-305 tandem
Sed05g1284 Sed-Chr5:24556326 Sed06g1217 Sed-Chr6:35437882 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1217 K24194 - csv:101205388 1359.74