Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g1218 | ATGGAGGAAACTTTTGTTCCTTTACGTGGAATCAAGAATGACCTGAAAGGGAGGTTACTGTGTTACAAACAAGACTGGACTGGTGGATTCAGAGCTGGATATAGGATTTTGGCTCCCACTACTTACATATTCTTTGCCTCTGCAATTCCTGTCATTTCATTTGGTGAACAGTTGGAGAGAAATACTGATGGGGTGCTAACTGCAGTTCAAACCTTAGCCTCCACAGCTCTATGTGGAATCATTCACTCCATTATTGGAGGTCAACCTTTGCTAATCTTGGGAGTTGCTGAGCCTACTGTTATTATGTACACCTTCATGTTTAATTTTGCCAAGGAACGGCCCGAATTGGGTCGGAATCTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATCTTAGGAGCTTGCTCCATCATCAATAGATTCACTCGTCTGGCCGGTGAATTGTTCGGATTGCTTATTGCGATGCTTTTCATGCAGCAAGCTGTTAAAGGACTTGTGGACGAGTTTCGCATCCCAGAGCGAGAAAATGGGAAATTGATCGAGTTTATACCTTCTTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTGTCATTTGGCCTTCTACTCACTGCTTTAAGGAGTCGAAAGGCACGGTCTTGGCGATATGGATCTGGTTGGCTCAGAAGCTTGATAGCAGACTACGGAGTGCCGCTCATGGTTCTTGTTTGGACAGGTGTTTCCTATATACCTACGAAAAGTGTTCCAGAAGGAATCCCAAGGCGGCTCTTCAGCCCGAATCCATGGTCTCCCGGTGCGTATGACAATTGGACTGTTATCAAGGATATGCTTGACGTTCCAGTTTTTTATATATGTGGAGCTTTCATCCCGGCTACGATGATTGCGGTGCTGTACTATTTCGACCATAGTGTTGCATCACAACTTGCTCAGCAGAAAGAGTTCAATTTGAGGAAACCATCTTCTTACCATTATGATTTACTTCTATTGGGGTTCTTGACATTACTATGTGGTCTTCTTGGAATTCCTCCATCCAATGGAGTCATCCCACAGTCTCCAATGCATACAAAGAGCCTGGCTACTCTCAAACACCAGTTGCTGCGGAATAAGCTCGTAGAAAGGGCACGGAGTAGTATGCGAAAGAATGCTAGCCTTGGACAGTTGTATGGAAGTATGCAAGAAGCATACCAACAAATGCAGACTCCCCTGATCTACCAGCAGCCTGCAGTTCGTGGACTGAATGAGCTAAAAGAGACAACCATTCAAGCAGCTTCTAGTATGGGAAGTTTCGATGCTCCAGTCGATGAGACTGTATTCGACATAGAAAAGGAAATTGATGATCTATTGCCTGTTGAGGTGAAAGAACAGCGTGTCAGTAATTTGCTTCAAGCTGCAATGGTAGGAGGATGTGTTGCAGCCATGCCGGTTCTGAAAAAGATCCCGACCTCGGTTCTATGGGGTTACTTCGCCTTTATGGCCATCGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTACTCTTCACTGCACCAAGCAGAAGATTCAAGTAA | 1584 | 45.01 | MEETFVPLRGIKNDLKGRLLCYKQDWTGGFRAGYRILAPTTYIFFASAIPVISFGEQLERNTDGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQQAVKGLVDEFRIPERENGKLIEFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGWLRSLIADYGVPLMVLVWTGVSYIPTKSVPEGIPRRLFSPNPWSPGAYDNWTVIKDMLDVPVFYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLLCGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVERARSSMRKNASLGQLYGSMQEAYQQMQTPLIYQQPAVRGLNELKETTIQAASSMGSFDAPVDETVFDIEKEIDDLLPVEVKEQRVSNLLQAAMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRFK | 527 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 35437882 | 35442359 | - | Sed0004630.2 | Sed06g1218 | 717761 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g1218 | 527 | Pfam | HCO3- transporter integral membrane domain | 460 | 521 | IPR011531 | GO:0006820(InterPro)|GO:0016020(InterPro) | |
Sed06g1218 | 527 | Pfam | HCO3- transporter integral membrane domain | 8 | 179 | IPR011531 | GO:0006820(InterPro)|GO:0016020(InterPro) | |
Sed06g1218 | 527 | Pfam | HCO3- transporter integral membrane domain | 201 | 372 | IPR011531 | GO:0006820(InterPro)|GO:0016020(InterPro) | |
Sed06g1218 | 527 | FunFam | probable boron transporter 2 | 18 | 60 | - | - | |
Sed06g1218 | 527 | PANTHER | ANION EXCHANGE PROTEIN | 5 | 523 | IPR003020 | GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0046715(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER) | |
Sed06g1218 | 527 | Gene3D | Helical hairpin bin | 18 | 60 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1284 | Sed-Chr5:24556326 | Sed06g1218 | Sed-Chr6:35437882 | 2.40E-297 | dispersed | |
Sed06g1218 | Sed-Chr6:35437882 | Sed06g2136 | Sed-Chr6:45177084 | 1.60E-186 | dispersed | |
Sed06g1217 | Sed-Chr6:35437882 | Sed06g1218 | Sed-Chr6:35437882 | 3.10E-305 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g1218 | K24194 | - | csv:101205388 | 1009.98 |