Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1218 ATGGAGGAAACTTTTGTTCCTTTACGTGGAATCAAGAATGACCTGAAAGGGAGGTTACTGTGTTACAAACAAGACTGGACTGGTGGATTCAGAGCTGGATATAGGATTTTGGCTCCCACTACTTACATATTCTTTGCCTCTGCAATTCCTGTCATTTCATTTGGTGAACAGTTGGAGAGAAATACTGATGGGGTGCTAACTGCAGTTCAAACCTTAGCCTCCACAGCTCTATGTGGAATCATTCACTCCATTATTGGAGGTCAACCTTTGCTAATCTTGGGAGTTGCTGAGCCTACTGTTATTATGTACACCTTCATGTTTAATTTTGCCAAGGAACGGCCCGAATTGGGTCGGAATCTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATCTTAGGAGCTTGCTCCATCATCAATAGATTCACTCGTCTGGCCGGTGAATTGTTCGGATTGCTTATTGCGATGCTTTTCATGCAGCAAGCTGTTAAAGGACTTGTGGACGAGTTTCGCATCCCAGAGCGAGAAAATGGGAAATTGATCGAGTTTATACCTTCTTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTGTCATTTGGCCTTCTACTCACTGCTTTAAGGAGTCGAAAGGCACGGTCTTGGCGATATGGATCTGGTTGGCTCAGAAGCTTGATAGCAGACTACGGAGTGCCGCTCATGGTTCTTGTTTGGACAGGTGTTTCCTATATACCTACGAAAAGTGTTCCAGAAGGAATCCCAAGGCGGCTCTTCAGCCCGAATCCATGGTCTCCCGGTGCGTATGACAATTGGACTGTTATCAAGGATATGCTTGACGTTCCAGTTTTTTATATATGTGGAGCTTTCATCCCGGCTACGATGATTGCGGTGCTGTACTATTTCGACCATAGTGTTGCATCACAACTTGCTCAGCAGAAAGAGTTCAATTTGAGGAAACCATCTTCTTACCATTATGATTTACTTCTATTGGGGTTCTTGACATTACTATGTGGTCTTCTTGGAATTCCTCCATCCAATGGAGTCATCCCACAGTCTCCAATGCATACAAAGAGCCTGGCTACTCTCAAACACCAGTTGCTGCGGAATAAGCTCGTAGAAAGGGCACGGAGTAGTATGCGAAAGAATGCTAGCCTTGGACAGTTGTATGGAAGTATGCAAGAAGCATACCAACAAATGCAGACTCCCCTGATCTACCAGCAGCCTGCAGTTCGTGGACTGAATGAGCTAAAAGAGACAACCATTCAAGCAGCTTCTAGTATGGGAAGTTTCGATGCTCCAGTCGATGAGACTGTATTCGACATAGAAAAGGAAATTGATGATCTATTGCCTGTTGAGGTGAAAGAACAGCGTGTCAGTAATTTGCTTCAAGCTGCAATGGTAGGAGGATGTGTTGCAGCCATGCCGGTTCTGAAAAAGATCCCGACCTCGGTTCTATGGGGTTACTTCGCCTTTATGGCCATCGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTACTCTTCACTGCACCAAGCAGAAGATTCAAGTAA 1584 45.01 MEETFVPLRGIKNDLKGRLLCYKQDWTGGFRAGYRILAPTTYIFFASAIPVISFGEQLERNTDGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQQAVKGLVDEFRIPERENGKLIEFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGWLRSLIADYGVPLMVLVWTGVSYIPTKSVPEGIPRRLFSPNPWSPGAYDNWTVIKDMLDVPVFYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLLCGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVERARSSMRKNASLGQLYGSMQEAYQQMQTPLIYQQPAVRGLNELKETTIQAASSMGSFDAPVDETVFDIEKEIDDLLPVEVKEQRVSNLLQAAMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRFK 527
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 35437882 35442359 - Sed0004630.2 Sed06g1218 717761
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1218 527 Pfam HCO3- transporter integral membrane domain 460 521 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed06g1218 527 Pfam HCO3- transporter integral membrane domain 8 179 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed06g1218 527 Pfam HCO3- transporter integral membrane domain 201 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed06g1218 527 FunFam probable boron transporter 2 18 60 - -
Sed06g1218 527 PANTHER ANION EXCHANGE PROTEIN 5 523 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0046715(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Sed06g1218 527 Gene3D Helical hairpin bin 18 60 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1284 Sed-Chr5:24556326 Sed06g1218 Sed-Chr6:35437882 2.40E-297 dispersed
Sed06g1218 Sed-Chr6:35437882 Sed06g2136 Sed-Chr6:45177084 1.60E-186 dispersed
Sed06g1217 Sed-Chr6:35437882 Sed06g1218 Sed-Chr6:35437882 3.10E-305 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1218 K24194 - csv:101205388 1009.98