Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1229 ATGTCCATCGCTGCAGGTATATTGAAACAGGTTTCTTGCCAGTTTCCAAAGCAGTTCTTTTTATTGTGGGTTTTAGTTTCCATCACCAATGCCTACGTTCCCGATATACCAGCAGCACCTCTGGTTGCACCTGCTATCCACGATATGCCTTTTCCTGCCGAATTGCCCCTTCACCAGCACCACCATCGAAAGCATATGTCACCACAGAGGGCACCCGCTCCGGCATCTCCTCCTTACTATGGGCCTCTCATCACTTCTGGTCACGCACCCACAAGTTCAAATTTTTCAAAACCGTTGATGAAGAGTGGATCAGCTCCTCCTGATGGCAGGCTTGAAAACATTGCTCCCATACAGTCGAGTGCTGGTGCAATTCCCTCTGGATTACCTCAGCCACCACTTTCTCCGAATGCGGATGCAGACTGTTGCAAACCTGACATGGTGCTTATACGAGGAAGTGGCGATGACTGCCATTGTGTCTATCCCATAAAAATTGATCTCCTCCTCTTGAATGTATCACAGAATCCTAATTGGAAACTTTTTCTTGAAGAGTTAGCTTCTGAACTTGGTTTACGAGTTTCCCAAATTGAGCTGATAAACTTTTATGTACTTGGTTTATCAAGATTAAATATCTCAATGGACATTACTCCGCATGCTGGGATCAGCTTCTCTGCAGTTGATGCATCTGCAATAAATTCTTCACTTACAATGCATAAGGTTCATCTAGACCCTACACTGGTTGGTGATTACAATCTTCTCAATATCACTTGGTTTAAGCCTCCGTCTCCTTCTCCAGCTCCTATAGCTTCCGCATCACCTGTAGAAGCTCCAGCATATCATTTTCCATCCTCAACATCATTGAGTCCTCCTAGTAAAGGACACCATTCCAATCTGGCACTTCTTCTTGGTATTGGCGCTGGCTTTTTTTTCATTGCCATTCTATTTGTGTTGATAATTTGTCTATGCACATCTCATTGCCGGAATACCGAAGCACCTCCATTAGTAGCTGAAAAACCAAGGGTTGAGGACAGAGTGCCTGGGGTAGGATCTTTCCCTCATCCAACAAGTATGAGATTTCTAACTTTTGAGGAGCTCAAAGAAGCAACTAATAACTTTGAAGCAACTAGCATACTGGGGGAGGGTGGCTTTGGCCGGGTTTTTAAGGGTGTCTTAAGTGACGGCACAGCTGTTGCTATCAAGAAGCTTACAAGTGGAGGGCAACAAGGTGACAAGGAGTTTTTAGTTGAAGTCGAGATGCTTAGCCGGTTGCATCATCGAAATCTCGTTAAACTTGTTGGCTACTACAGTAATCGCGACTCTTCACAAAACCTGCTATGCTATGAACTTGTTCCAAATGGAAGCTTGGAGGCCTGGCTCCATGGTCCTTTAGGTGCTAATTGTCCTTTGGGTTGGGACACCAGAATGAAAATTGCATTGGATGCTGCTCGAGGACTTGCTTACCTTCATGAAGACTCGCAACCATGTGTTATCCATCGAGACTTTAAGGCATCAAATATATTGCTCGAGAACAACTTCCATGCCAAAGTTGCCGACTTCGGTCTTGCTAAACAAGCTCCGGACGGCAGGGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGGTATGTCGCCCCCGAGTATGCAATGACTGGTCATCTACTTGTGAAAAGTGATGTTTATAGCTACGGAGTCGTTCTTCTTGAGTTGCTCACTGGAAGGAAACCTGTAGATATGTCACAACCATCAGGGCAGGAGAATCTGGTCACATGGGCTAGGCCGATTTTGAGAGATAAGGATCGGTTGGAAGAACTTGCTGATCCATGGCTCGGAGGAAAGTATCCGAAGGAGGATTTCGTGCGGGTGTGCACCATTGCTGCTGCCTGCGTGGCTCCCGAGGCTGGCCAACGTCCAAGTATGGGTGAAGTTGTTCAGTCTCTAAAAATGGTGCAACGCGTTACAGAATACCAAGACTCCATGGTACCATCCTCTAACAACCAAACCAATCTTAAACAGTCTTCCGCGACATTCGAGTCTGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGCGCATTTGACAATGATAATGTATCTCGGACAGCAGTTTTCTCCGAAGATCTTCATGAGGGACGATGA 2148 45.67 MSIAAGILKQVSCQFPKQFFLLWVLVSITNAYVPDIPAAPLVAPAIHDMPFPAELPLHQHHHRKHMSPQRAPAPASPPYYGPLITSGHAPTSSNFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPSGLPQPPLSPNADADCCKPDMVLIRGSGDDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELGLRVSQIELINFYVLGLSRLNISMDITPHAGISFSAVDASAINSSLTMHKVHLDPTLVGDYNLLNITWFKPPSPSPAPIASASPVEAPAYHFPSSTSLSPPSKGHHSNLALLLGIGAGFFFIAILFVLIICLCTSHCRNTEAPPLVAEKPRVEDRVPGVGSFPHPTSMRFLTFEELKEATNNFEATSILGEGGFGRVFKGVLSDGTAVAIKKLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGANCPLGWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPDGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPWLGGKYPKEDFVRVCTIAAACVAPEAGQRPSMGEVVQSLKMVQRVTEYQDSMVPSSNNQTNLKQSSATFESDGSSSMFSSGPYSGLSAFDNDNVSRTAVFSEDLHEGR 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35736122 35741797 + Sed0007049.1 Sed06g1229 717772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1229 715 ProSitePatterns Protein kinases ATP-binding region signature. 377 400 IPR017441 GO:0005524(InterPro)
Sed06g1229 715 Gene3D Transferase(Phosphotransferase) domain 1 449 673 - -
Sed06g1229 715 Pfam Protein tyrosine and serine/threonine kinase 374 646 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1229 715 SUPERFAMILY Protein kinase-like (PK-like) 345 648 IPR011009 -
Sed06g1229 715 Gene3D Phosphorylase Kinase; domain 1 352 448 - -
Sed06g1229 715 ProSiteProfiles Protein kinase domain profile. 371 649 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1229 715 FunFam Receptor-like serine/threonine-protein kinase ALE2 351 448 - -
Sed06g1229 715 FunFam Receptor-like serine/threonine-protein kinase ALE2 449 667 - -
Sed06g1229 715 PANTHER OS01G0750732 PROTEIN 140 688 IPR050885 -
Sed06g1229 715 MobiDBLite consensus disorder prediction 658 697 - -
Sed06g1229 715 CDD STKc_IRAK 377 647 - -
Sed06g1229 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1229 Sed-Chr6:35736122 Sed12g1762 Sed-Chr12:28729590 1.70E-101 dispersed
Sed06g1667 Sed-Chr6:41434128 Sed06g1229 Sed-Chr6:35736122 9.40E-55 dispersed
Sed11g1157 Sed-Chr11:27498467 Sed06g1229 Sed-Chr6:35736122 1.10E-71 dispersed
Sed12g1281 Sed-Chr12:9379430 Sed06g1229 Sed-Chr6:35736122 9.20E-72 dispersed
Sed05g1269 Sed-Chr5:23643878 Sed06g1229 Sed-Chr6:35736122 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79365 PF00069 Pkinase 4.20E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1229 - - - 0.0