Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1290 ATGGACGAAGCAATAATCACTTCTGTTGCTGGATTTCTAAGTGCTTTTGCCCCAAATTATATCTCTTTGCTAATTCTTCGCTGTCTAGTTGGCTTTGGGTTGGGAGGTGGCCCTGTACTTGCTTCCTGGTTCTTGGAGTTCATTCCTGCCCCTGAAAGAGGCACTTGGATGGCTATTTTCTCAGCATTTTGGACTGTTGGAACAATCCTTGAAGCTTCATTGGCATGGGTGGTCATGCCAAACTTAGGTTGGAGGTGGCTCCTCGTATTTTCTTCTTTACCTTCATTTCTTCTACTGCTCTTCTACCAAGTTACTCCAGAGTCCCCACGGTATCTCTGTTTACAAGGCAGAACAAGTGATGCAGCTATTGTTCTAGAGAAAATAGCACGGTATAATAGAACAAATGTTCCTCCTGGAAATCTTGTTTCTAGTCATTCGTATGATTTTGAGGAGCAAAGTATTCCCGTGGAAGATGTACATTTGCTTCCACAAAGACAAACAAAAGTTGAAACTTTTCAAGCCTCAAAATTCAATGTAGTCGGTATCTCTCCATTGTTAAAGCTTCTTTCTCGAGAACTGATTGTGTCTACATTGCTCTTGTGGGTAGTTTTCTTTGGAAATGCCTTTTCTTATTATGGCATCGTGTTGCTGACCTCCGAGTTGACTGGGGAGAGTCGATGCACGTCTACTGATATACGTCTAAAAGAAAGTGATGTTGTCAACTACAGAGATGTCTTTATCTCTAGTTTTGCAGAGTTTCCTGGTCTCGTGTTGTCAGCTGTCTTGGTTGACAAATTAGGGCGTAAATTATCGATGGCTGCAACGCTCTTCTTGGCCGCCGCCTTTCTGTTTCCCTTGGCGTTTTATCAGATTGATGGCTTAACTACAGGCCTCTTGTTTGGAGCTCGCGTATTTGTCACATGTGCATTCACAGTTGTCTATATATATGCTCCCGAGATTTATCCAACCTCAATCCGAACAACCGGTGTCGGGGTTGCTAGCTCTATTGGAAGAATTGGGGGAATGGTGTGCCCTCTCGTGGCAGTAGCTCTGGTTAAAGGATGCCATCAAACAGAGGCCATTGTCTTGTTTGAGATTATAATTTTTCTGTCAGGGATCTGTGTTGTTTTCTTCCCATTTGAAACCACGGGACAAGATCTTCCTGAAAAAATGTAG 1176 43.11 MDEAIITSVAGFLSAFAPNYISLLILRCLVGFGLGGGPVLASWFLEFIPAPERGTWMAIFSAFWTVGTILEASLAWVVMPNLGWRWLLVFSSLPSFLLLLFYQVTPESPRYLCLQGRTSDAAIVLEKIARYNRTNVPPGNLVSSHSYDFEEQSIPVEDVHLLPQRQTKVETFQASKFNVVGISPLLKLLSRELIVSTLLLWVVFFGNAFSYYGIVLLTSELTGESRCTSTDIRLKESDVVNYRDVFISSFAEFPGLVLSAVLVDKLGRKLSMAATLFLAAAFLFPLAFYQIDGLTTGLLFGARVFVTCAFTVVYIYAPEIYPTSIRTTGVGVASSIGRIGGMVCPLVAVALVKGCHQTEAIVLFEIIIFLSGICVVFFPFETTGQDLPEKM 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 36907829 36915959 + Sed0007185.2 Sed06g1290 717833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1290 391 SUPERFAMILY MFS general substrate transporter 5 389 IPR036259 -
Sed06g1290 391 Pfam Sugar (and other) transporter 5 388 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed06g1290 391 ProSitePatterns Sugar transport proteins signature 1. 259 275 IPR005829 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed06g1290 391 Gene3D MFS general substrate transporter like domains 3 390 IPR036259 -
Sed06g1290 391 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 4 388 - -
Sed06g1290 391 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 383 IPR020846 GO:0022857(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1290 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2748 Sed-Chr5:38838561 Sed06g1290 Sed-Chr6:36907829 2.00E-114 dispersed
Sed06g1289 Sed-Chr6:36907829 Sed06g1290 Sed-Chr6:36907829 1.90E-216 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g395 . . . . . . Bma10g00528 . . Cmo04g00995 Cma01g01160 Cma09g00915 . Car09g00832 Sed06g1290 Cpe06g00737 Cpe02g00741 Bhi09g01959 Tan01g4494 Cmetu04g2937 . Hepe01g1322 Mch11g1139 . . . . . . . . . . Cone14ag1116 Cone15ag1131 Lsi04g01254 . Chy04g01028 . Blo07g00925 . . . . Bpe03g00809 . . . Cmo01g01215 Cmo09g00909 . . Car04g00867 Car16g00573 . Cpe01g00838 . . . . . . . Cla05g01552 Cam05g1660 Cec05g1665 Cco05g1704 Clacu05g1654 Cmu05g1548 Cre05g1660 . . . Cme04g00786
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004806 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 3 3 1 40