Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1358 ATGGCGGCAGCGTCGACGACGACGACGACGAACAACGAAATCGAAGAAGAAAAAGTTTCGAAGCTCGAAGAAGGCACTCTGGTTTCCTCGGTTGCCCGTCTCTGCCCCTCATCTTGGGTCGTCACCATCCAAAAGGTTATTGCGGAGGTGATCGGAACGTTCTTCGTGATCTTCGCGGGATGTGGAGCGGTCGCGGTGAACAAAATATACGGATCGGTGTCGTTTCCAGGAATCTGTGTGGTCTGGGGATTGATTGTTATGGTAATGGTGTATTCCTTGGGACATATCTCCGGAGCTCACTTCAACCCTGCTGTTACTATCACCTTCGCCCTTTTTCGTCGCTTCCCTATCTGCCAGGTTCCATTATACATAGTAGCTCAATTAGCAGGGTCTCTTCTTGCAAGCTGCATTCTTGATTTATTGCTTGAAACAACCCCCGAATCCTACTTTGGAACACTGCCTGCTGGATCCAATGTCCAATCTTTGGTCTTCGAAATCATCATCACTTTCCTCTTGATGTTTGTCATCTCTGCTGTCTCCACTGATGACAGAGCTGTAGGAGAATTAGCTGGAATTGCAGTTGGAATGACCATTCTCTTGAATGTTTTGGTTGCTGGGCCGATTTCGGGTGCTTCCATGAATCCAGCTAGGAGCATTGGACCCGCGATCGTAAAACGACAGTTCAAAGGATTATGGGTATACATCGTCGGGCCGATGATCGGAGCGGTCGTGGGAGGATTTTCCTATAATCTAATGAGATTCACAGACAAACCGCTACGGGAGATCACTCGTAGTCGCTCGTTCCTCTCCGGTAGACAAACAGCATAA 828 48.55 MAAASTTTTTNNEIEEEKVSKLEEGTLVSSVARLCPSSWVVTIQKVIAEVIGTFFVIFAGCGAVAVNKIYGSVSFPGICVVWGLIVMVMVYSLGHISGAHFNPAVTITFALFRRFPICQVPLYIVAQLAGSLLASCILDLLLETTPESYFGTLPAGSNVQSLVFEIIITFLLMFVISAVSTDDRAVGELAGIAVGMTILLNVLVAGPISGASMNPARSIGPAIVKRQFKGLWVYIVGPMIGAVVGGFSYNLMRFTDKPLREITRSRSFLSGRQTA 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37728624 37732797 - Sed0012286.1 Sed06g1358 717901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1358 275 SUPERFAMILY Aquaporin-like 42 261 IPR023271 -
Sed06g1358 275 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g1358 275 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g1358 275 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g1358 275 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g1358 275 PRINTS Major intrinsic protein family signature 232 252 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g1358 275 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g1358 275 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Sed06g1358 275 NCBIfam MIP family channel protein 48 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g1358 275 Pfam Major intrinsic protein 42 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g1358 275 PANTHER AQUAPORIN NIP2-1 19 257 IPR034294 -
Sed06g1358 275 Gene3D Glycerol uptake facilitator protein. 2 262 IPR023271 -
Sed06g1358 275 CDD MIP 44 252 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1358 Sed-Chr6:37728624 Sed14g1536 Sed-Chr14:23582304 1.90E-77 dispersed
Sed06g1358 Sed-Chr6:37728624 Sed10g0202 Sed-Chr10:1175963 3.80E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1358 K09874 - csv:101215315 414.846