Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1382 ATGATCCTGTCATGGAGGAAAACAAAACTTGGGTTTCTCCCCAAGTTGAAGAAGGAGCTTCCAGGCGTCGATTCGGGTACGGAAATTGTCATTCCTTCCCATTTTTTGTGTCCGATTTCGCTTGATTTGATGAAGGACCCTGTGATTTTGTCTACTGGGATTACTTACGATAGAGGGAGCATAGAGAAGTGGATTGAAGGGGGGAATTTCTCTTGTCCTGTGACCAAACATGATTTGACGAGTTTCGACCTAATCCCCAATCACACGTTGAGGAAGATGATCCAAGATTGGTGCGTTGCGAACCGTTCTTACGGGATCGAGCGGATTCCCACGCCGCGGATACCCATCTCGCCCTATGAAGTTAACGAGGTTTGTTCCCGAATCGCCGTTGCGACTCAAAAGGGCGATTTGAAGAGGTGTGGTGAATTGGTGGGGAAGATTAGGAATTGGGTGAGAGAGAGCGAGAGGAATCGGAGATGTATTGTAAATGGAGGAGCTGGGAATGTTTTAGCAGCTTCGTTTGAGCATTTTGCTTGTGCTTCCATTGAGAAACATGTGGGATTGTTGGAGGAGATTTTGTTGGTTTTGGTTTGTATGTTTCCGATCGACATTGAAGGCTTATCTAAGCTCGGATCCGCGGATTCGTTGAGATGCTTAGTTTCCTTCTTAATGGGGAAAGATCTTTCTCCAAAACAGAATGCAGTTTTTGTTCTGAAAGAACTAATATTGGCTGATCAAGGATATGTTGATTCATTGGCTGCCATTGAAGGAGTATCTGAGGCTTTAGTTAGCATCATCAGAGAGCCACTTTGCCCCTCAGCTACAAAATCATCACTCATAGCCATTTTCTACATGATCTTACCCTCAGAAATCAGTGAGAAAATGGCATCCAAATTTCTCGAACTGGGCTTGGTCGCTCAGCTGCTAGATTTTATGGTAGATGCAGAGAAAAGTCTGTGCGAGAAAGCTTTGGGAGTTTTGGATGGAATCTGTGATTTCAAACAAGGAAGAGAGAAGCTTTACCAAAATGCATTAACCATTCCACTCTTGGTGAAGAAGATCCTAAGAGTTTCAGAGGTAGCCACTGAATATTGTTTGTCAATATTGTTGAAGCTTTGTAAGAGTGGAGAGAAGGGTGAGGATGAGATGAGGGTGGAAGCAGCTCAATTGGGTGCTTTTCAGAAGATATTGGTTCTTTTACAGGTTGGTTGTGGTGGTGACATGAAAGACAAGGTCACTGAGATGTTGAAATTGTTGAATCTCTACAAAGATAGGTTAGATTGTATTGATTCATCCATGCATTTTAAGTACTTGAAGAGATCATTCTGA 1329 43.12 MILSWRKTKLGFLPKLKKELPGVDSGTEIVIPSHFLCPISLDLMKDPVILSTGITYDRGSIEKWIEGGNFSCPVTKHDLTSFDLIPNHTLRKMIQDWCVANRSYGIERIPTPRIPISPYEVNEVCSRIAVATQKGDLKRCGELVGKIRNWVRESERNRRCIVNGGAGNVLAASFEHFACASIEKHVGLLEEILLVLVCMFPIDIEGLSKLGSADSLRCLVSFLMGKDLSPKQNAVFVLKELILADQGYVDSLAAIEGVSEALVSIIREPLCPSATKSSLIAIFYMILPSEISEKMASKFLELGLVAQLLDFMVDAEKSLCEKALGVLDGICDFKQGREKLYQNALTIPLLVKKILRVSEVATEYCLSILLKLCKSGEKGEDEMRVEAAQLGAFQKILVLLQVGCGGDMKDKVTEMLKLLNLYKDRLDCIDSSMHFKYLKRSF 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38227515 38229129 + Sed0007757.1 Sed06g1382 717925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1382 442 PANTHER WDSAM1 PROTEIN 28 430 IPR045185 GO:0061630(InterPro)
Sed06g1382 442 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g1382 442 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Sed06g1382 442 Gene3D - 123 417 IPR011989 -
Sed06g1382 442 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g1382 442 CDD RING-Ubox_PUB 32 84 IPR045210 -
Sed06g1382 442 SUPERFAMILY ARM repeat 187 376 IPR016024 -
Sed06g1382 442 SUPERFAMILY RING/U-box 26 107 - -
Sed06g1382 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 108 IPR013083 -
Sed06g1382 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0302 Sed-Chr4:2251408 Sed06g1382 Sed-Chr6:38227515 2.10E-118 dispersed
Sed04g2990 Sed-Chr4:41224796 Sed06g1382 Sed-Chr6:38227515 2.30E-117 dispersed
Sed06g1382 Sed-Chr6:38227515 Sed07g1298 Sed-Chr7:9748321 8.80E-53 dispersed
Sed05g2700 Sed-Chr5:38426075 Sed06g1382 Sed-Chr6:38227515 1.60E-219 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1382 - - - 0.0