Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1393 ATGTCGGGGTTGAGAATTCAGGCAGCCGCTTGTGTTGTTTCCTCGTCCATGAAGCAGCTGGGTTTTACTTCCAACTCCTCGTTTTCCCCTTTTCACCATTCATCTTTGTGCTTCAGGCGCTATTATGGTGCTGCCACCAGACGAGCTCTCTCTGTTGTTTCCATGTCGGTTAGCCCTCTTCAAGCCTGTGTCAAAGCCTCCATCACCCTCCCCAACACCCTCGGCGACTGCCCTTTTTGCCAAAGGGTGTTACTGACTATGGAGGAAAAGAATCTACCCTATGATCTAAAGTTGGTAGACTTGTCAAACAAGCCAGAATGGTTTTTAAACATAAATTCAGAGGGAAAAGTTCCTGTTGTTAAATTTGATGAGCAGTGGGTTGTAGATTCAGATGTTATAACACAAACACTGGAAGAGAAGTACCCAAATCCACCCTTAGCGACCCCTGCTGATAAATCTTCAGTAGGATCAAAGATTTTCTCCACATTTATTGCTTTCCTCAAGAGCAAGGTTCCTAATGATGGAACCGAACAAGCATTACTTAGTGAGCTAAGTTCTTTCAACGATTACATCAAAGAGAATGGCCCTTTTATCAAAGGGAAAGGGATTTCTGCAGCCGACCTTTCACTTTGTCCAAAGTTGTACCATCTAGAAATTGCATTGGGTCACTATAAGAACTGGTCTGTTCCAGACAGCCTACCCTTCCTGAAGTCTTACATGAAGAGCATATTCTCAAGAGAGTCATTTGCAAAAACTCGTGCACTGCCTGAGGATGTTATTGCTGGTTGGCGTCCAAAGGTCTTTGGTTGA 810 44.2 MSGLRIQAAACVVSSSMKQLGFTSNSSFSPFHHSSLCFRRYYGAATRRALSVVSMSVSPLQACVKASITLPNTLGDCPFCQRVLLTMEEKNLPYDLKLVDLSNKPEWFLNINSEGKVPVVKFDEQWVVDSDVITQTLEEKYPNPPLATPADKSSVGSKIFSTFIAFLKSKVPNDGTEQALLSELSSFNDYIKENGPFIKGKGISAADLSLCPKLYHLEIALGHYKNWSVPDSLPFLKSYMKSIFSRESFAKTRALPEDVIAGWRPKVFG 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38347862 38352985 - Sed0006690.1 Sed06g1393 717936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1393 269 SFLD Main (cytGST) 76 243 - -
Sed06g1393 269 Pfam Glutathione S-transferase, N-terminal domain 77 139 IPR004045 -
Sed06g1393 269 SUPERFAMILY GST C-terminal domain-like 140 267 IPR036282 -
Sed06g1393 269 Gene3D - 147 268 - -
Sed06g1393 269 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 60 266 IPR044627 GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(PANTHER)|GO:0045174(InterPro)|GO:0098869(InterPro)
Sed06g1393 269 FunFam Glutathione S-transferase DHAR3, chloroplastic 147 269 - -
Sed06g1393 269 CDD GST_N_family 77 138 - -
Sed06g1393 269 CDD GST_C_DHAR 146 266 - -
Sed06g1393 269 SFLD Glutathione Transferase (cytosolic) 76 243 IPR040079 -
Sed06g1393 269 Gene3D Glutaredoxin 59 146 - -
Sed06g1393 269 FunFam Glutathione S-transferase DHAR3 chloroplastic 58 146 - -
Sed06g1393 269 SUPERFAMILY Thioredoxin-like 74 144 IPR036249 -
Sed06g1393 269 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 67 145 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1393 Sed-Chr6:38347862 Sed07g2442 Sed-Chr7:40239368 8.30E-70 dispersed
Sed06g1393 Sed-Chr6:38347862 Sed07g2441 Sed-Chr7:40212005 9.40E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1393 K21888 - csv:101203335 434.491