Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1404 ATGATTACAGGTAGCAAACCAGAGGAGCCAAAGGCTGCTGGAGACCCTTTAGCTCAACTTGGAAAAGGCGGAGCTGCCCTTATGGTATGTCGAACTGGTGAGAGGACTGAAACTGACATGAGACGTAGGAACGACGAAAACTCCGTTCGTGTCACCAACCTCTCAGAAGACACTAGAGAGCCTGACTTGCTTGAGCTTTTCCGACCTTTCGGTGCTGTTAGCAGAGTTTATGTTGCTCTTGATCAAAAGACTGGCATGAGCAGGGGATTTGGTTTTGTAAACTTTGTGAACCACCAGGATGCACATAGATCAATTAGCAAACTCAATGGATATGGTTATGATAATCTCATTAAGAGTTGA 360 45.28 MITGSKPEEPKAAGDPLAQLGKGGAALMVCRTGERTETDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVALDQKTGMSRGFGFVNFVNHQDAHRSISKLNGYGYDNLIKS 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38608143 38608536 - Sed0023654.1 Sed06g1404 717947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1404 119 Gene3D - 29 117 IPR012677 -
Sed06g1404 119 Pfam RNA recognition motif 49 115 IPR000504 GO:0003723(InterPro)
Sed06g1404 119 SMART rrm1_1 48 119 IPR000504 GO:0003723(InterPro)
Sed06g1404 119 SUPERFAMILY RNA-binding domain, RBD 41 115 IPR035979 GO:0003676(InterPro)
Sed06g1404 119 CDD RRM_eIF3G_like 48 117 IPR034240 -
Sed06g1404 119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 119 IPR000504 GO:0003723(InterPro)
Sed06g1404 119 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 27 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1404 Sed-Chr6:38608143 Sed08g2028 Sed-Chr8:34575973 3.70E-46 dispersed
Sed05g2673 Sed-Chr5:38150187 Sed06g1404 Sed-Chr6:38608143 1.50E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1404 K03248 - csv:101207022 189.119