Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g1411 | ATGGCTATTCCAATGTTTCTCACAACTCTTTTAGTGATTTTTCTTTCATCTTTAGCAAAGATTGCATATGAGACTGTTACATGCTACTGGCTCACTCCAAGAAGAATCAGAAAGAGGATGGCTGAGCAAGGCGTGCACGGCCCCGACCCGAGACCGCTGATCGGAAACATCGGCGATGTAGCCACGCTCGTGGCGAAATCTACTGCCGACGACATGAGCTCGATCAATCACGACGTCGTCGACCGCTTGATGCCTCATTACACCACTTGGACAAAGCTATACGGAAAACGATTTATTTTTTGGAACGGGGCAGAGCCAAGGCTGTGTTTGGCGGAGACCGAGTTGATAAAAGAAGTAATGGGGAAAACGAGCCGGGTGTGTGGGAGATCATGGCTGCAAAGACAAGGGACCAAACACTTCATAGGGAAAGGATTGTTGATGGCTAATGGTGAAGAATGGCAACATCAACGTCACATCGTTGCACCTGCGTTTATGGGGGAGAAGCTAAAGAGCTATACGGGGTTCATGGTGGAGTGCACTGAGAAAATGATTCAATCATTGGAGACCGAGTTGGACTCGGGCCGGACCGAGTTTGAAATCGCCGAGTACATGAAGCAACTCACTGCCGACATCATTTCTCGGACCGAGTTCGATACGAGCGCAGACAAAGGCAAGCAAATCTTCCATTTGCTCACTCTTCTTCAGCGCCTCTGCGCCCAAGCCAGCCGCCACCTCTGCCTTCCTGGTAGCCGGTTTTATCCAAGTAAATACAACAGAGAAATAAAGTCACTAAAAGTAGAAGTGGAAAGGCTGTTAATGGAGATAATTCAAAGTAGAAAAGATGGAGTAGAAATAGGAAGAAGCAGTGGGTATGGAAGTGATTTGTTGGGAATGCTTTTGAAGGAGATGCAAAGAAAAAGAGAGGATGGATTCAGCTTGAACTTGCAGCTCATAATGGATGAATGCAAGACTTTCTTCTTTGCTGGCCATGAAACCACTGCTCTTTTGCTCACTTGGACCATCATGTTGCTCGCCACGAACCCGTCGTGGCAACAAAAGGTTCGAGATGAAGTCAAGCAAGTTTGCAATTCTGGATCAACTCCCTTAATTGAACATCTATCTAAGCTCACTTTGCTAAATATGGTGATAAATGAATCCCTAAGGCTTTACCCGCCCGCCACAGTTCTTCCAAGAATGGCATTTGAAGACATAAAGATTGGAGATTTAGAGATCCCGAAAGGACTATCGATATGGATCCCAGTACTCGCAATTCATCACAGCCAAGAGTTGTGGGGAAAAGACGCAAACGAGTTCAAGCCCGAAAGATTCGCAGCGAAACCCTTCGTTGCTGGACGTTTCATTCCATTTGCAGCTGGACCAAGAAACTGCATTGGGCAAGGGTTTGCATTGATGGAAGCTAAGATCATCTTGGCTATGTTACTCTCAAAGTTTAGCTTCACTATTTCGGATACTTATCGCCATGCTCCTGTTACTGTTCTCACCATACAGCCTAAGTATGGAGTTCAAGTTTGCTTATCACCATTGAATTCTTGA | 1554 | 45.95 | MAIPMFLTTLLVIFLSSLAKIAYETVTCYWLTPRRIRKRMAEQGVHGPDPRPLIGNIGDVATLVAKSTADDMSSINHDVVDRLMPHYTTWTKLYGKRFIFWNGAEPRLCLAETELIKEVMGKTSRVCGRSWLQRQGTKHFIGKGLLMANGEEWQHQRHIVAPAFMGEKLKSYTGFMVECTEKMIQSLETELDSGRTEFEIAEYMKQLTADIISRTEFDTSADKGKQIFHLLTLLQRLCAQASRHLCLPGSRFYPSKYNREIKSLKVEVERLLMEIIQSRKDGVEIGRSSGYGSDLLGMLLKEMQRKREDGFSLNLQLIMDECKTFFFAGHETTALLLTWTIMLLATNPSWQQKVRDEVKQVCNSGSTPLIEHLSKLTLLNMVINESLRLYPPATVLPRMAFEDIKIGDLEIPKGLSIWIPVLAIHHSQELWGKDANEFKPERFAAKPFVAGRFIPFAAGPRNCIGQGFALMEAKIILAMLLSKFSFTISDTYRHAPVTVLTIQPKYGVQVCLSPLNS | 517 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 38761225 | 38766345 | + | Sed0021675.1 | Sed06g1411 | 717954 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g1411 | 517 | Gene3D | Cytochrome P450 | 29 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | PRINTS | P450 superfamily signature | 463 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | PRINTS | P450 superfamily signature | 454 | 463 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | PRINTS | P450 superfamily signature | 381 | 392 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | SUPERFAMILY | Cytochrome P450 | 79 | 514 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | Coils | Coil | 261 | 281 | - | - | |
| Sed06g1411 | 517 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 13 | 508 | IPR050665 | GO:0004497(PANTHER) | |
| Sed06g1411 | 517 | Coils | Coil | 177 | 197 | - | - | |
| Sed06g1411 | 517 | Pfam | Cytochrome P450 | 87 | 491 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | PRINTS | E-class P450 group I signature | 91 | 110 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | PRINTS | E-class P450 group I signature | 463 | 486 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | PRINTS | E-class P450 group I signature | 453 | 463 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g1411 | 517 | PRINTS | E-class P450 group I signature | 421 | 445 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed06g1411 | Sed-Chr6:38761225 | Sed11g2101 | Sed-Chr11:34922951 | 1.20E-229 | dispersed | |
| Sed06g1411 | Sed-Chr6:38761225 | Sed11g0090 | Sed-Chr11:875648 | 9.50E-99 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g1411 | K10717 | - | csv:101213604 | 914.835 |