Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1431 ATGAACTCTCCAATTACCTCATTCCTCCTCCTATTTCCCTTCTCCCTTCTCTTTTCAGTTGGAAATCCCTTCAATTCACACAGCTCCTGCAGCAACCGCTTCGACTGCGGCCACATCACCGGCGTCGGTTACCCCTTCTGGGGCAGCCGCCGCCCGGTCGGATGCGGCCATCCGGCACTTCAACTAACCTGCCAACAAGACAACACAACCACGATGGTAATGAAGGAAATCACATACCATATCCTCAACCTCCACAACACAACCTTAACCATAGCCAGAGCCGATTACACAGCCGACCTCTGCCCCAACAAATTCACCAACACCACAATCGACGACACTCTCTTCGACATGATCCTTCCGAATCACCGAAACATCACCTTGCTCTACTGCTCATCCTCTCCCATCGCCCCCCAGTTCAGCTGCCCCGGTTTCGAATTCGGGTTCATTCAGGCGCCGCCCCCTCCTCTCGGCCCTAGCCTCTGTAACGCCACCGTCATCCTGCCGGTTTCTCTCGATTTCTTCCCGCCGGTGAGCCATTTGGTCAACGCTTCTGAAATGTTGAAGGCCATTAACGAGGGGTTTGAGGTTCGATTGAAGGACGACGGCGGCGGTTGTGGTGTTTGTGAGGCCTCCGGGGGGGCTTGCGCTTATGATTTGAGTTCTAATCGGACGGCGTGTTACTGTCCCCACGGCGGCGCTTGTTGGGGTTCGTCGGCCGGTCCGGCTCCGGCCTCTTCTCCGGCGGGTGGTAATGACTCTAAGAAAACACACCAAATAATAGGCCTTTTTGTTGGAGGGGCAACTGTATTAACCCTGTGTCTAGGATTCTGTGTCCTCTGTATTAAACTACGAAAGAAAAAACGTGTCCTAAAGTTGAAAAGCGAAGATCTTCCTTCGCCTCCTTCGAGTGCAGGCGTACCGACTCGCAGCATGTTGCTCTCTAACAGCACTCCTTCCTATCCATATTCTAGATCTGATCTCGACAATGGGAGTTCCTACTTTGGAGCTCAAGTTTTTACCTATTTTGAACTTCAAGAAGCAACTCTTAATTTTGACCCTTCAAGGGAGCTTGGAGATGGTGGTTACAGTACGGTTTACTATGGGACCCTCAAGGATGGACGGATAGTTGCGGTAAAGCGCCTATACGAAAACAATTATAAACGTGTTGAGCAGTTCATGAATGAAGTCGAGATTCTATCACGATTGCAACACCCGAACCTCGTGAAGCTTTATGGATGCACATCGAAACATAGTCAAGAACTCCTCTTAGTATATGAATACATACCTAATGGAACAGTGGCTGACAATCTGCACAGAAACAGAACAAATACTGGTTTACTCAATTGGTCTGTCAGGCTGAAGATTGCTATAGAGACTGCGAATGCACTCGCTTACCTCCATCGCAAAGATATCATTCATCGTGACGTCAAAACCAATAATATTCTCCTAGACAACAACTTCAAAGTAAAAGTGGCCGATTTCGGCCTGTCACGGTTATTTCCCATTGATGCTACTCATGTTTCAACTGCTCCACAAGGAACACTGGGCTATGTTGATCCAGAGTATCATCAGTGCTACCAACTTACCGACAAAAGCGACGTATATAGCTTTGGAGTTGTTTTGGTTGAGCTCATATCGTCGCTGCAAGCAGTTGACACCAACAGGAACAAAAATGACATCAATTTGTCTAATATGGCTATTGATAGAATTCAAAAACATGCTTTAGTTGATTTAGTAGATCAAGGTCTTGGGTTTGACAGGGATTATGTAGTAAGGTGTATGATAACTTCGGTGTCGGAGTTAGCTTTTCGATGTCTTCAACCGGAAAGGAGACTACGACCTTCTATGGATGAAGTGCTGGAAGTTCTGAGAGAAGTTGAGAGTGAAGAGCTGGCTGCTTGTAAAGCAGAAGTGTTGGATTTGGGGTCTGATAATCTTTCGCCACATTCTGGACCAGTGATAGATAAATGGGTTCTGAAAATTTTGAGGAGAAAGATTTGGAAGAAAAACCCATAG 2016 47.22 MNSPITSFLLLFPFSLLFSVGNPFNSHSSCSNRFDCGHITGVGYPFWGSRRPVGCGHPALQLTCQQDNTTTMVMKEITYHILNLHNTTLTIARADYTADLCPNKFTNTTIDDTLFDMILPNHRNITLLYCSSSPIAPQFSCPGFEFGFIQAPPPPLGPSLCNATVILPVSLDFFPPVSHLVNASEMLKAINEGFEVRLKDDGGGCGVCEASGGACAYDLSSNRTACYCPHGGACWGSSAGPAPASSPAGGNDSKKTHQIIGLFVGGATVLTLCLGFCVLCIKLRKKKRVLKLKSEDLPSPPSSAGVPTRSMLLSNSTPSYPYSRSDLDNGSSYFGAQVFTYFELQEATLNFDPSRELGDGGYSTVYYGTLKDGRIVAVKRLYENNYKRVEQFMNEVEILSRLQHPNLVKLYGCTSKHSQELLLVYEYIPNGTVADNLHRNRTNTGLLNWSVRLKIAIETANALAYLHRKDIIHRDVKTNNILLDNNFKVKVADFGLSRLFPIDATHVSTAPQGTLGYVDPEYHQCYQLTDKSDVYSFGVVLVELISSLQAVDTNRNKNDINLSNMAIDRIQKHALVDLVDQGLGFDRDYVVRCMITSVSELAFRCLQPERRLRPSMDEVLEVLREVESEELAACKAEVLDLGSDNLSPHSGPVIDKWVLKILRRKIWKKNP 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39091477 39098346 - Sed0018509.1 Sed06g1431 717974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1431 671 Pfam Wall-associated receptor kinase C-terminal 160 230 IPR032872 -
Sed06g1431 671 ProSiteProfiles Protein kinase domain profile. 351 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1431 671 Gene3D Transferase(Phosphotransferase) domain 1 428 638 - -
Sed06g1431 671 SMART serkin_6 351 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1431 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1431 671 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524(InterPro)
Sed06g1431 671 Gene3D Phosphorylase Kinase; domain 1 324 427 - -
Sed06g1431 671 Pfam Protein kinase domain 354 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1431 671 CDD STKc_IRAK 357 623 - -
Sed06g1431 671 SUPERFAMILY Protein kinase-like (PK-like) 332 625 IPR011009 -
Sed06g1431 671 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 632 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Sed06g1431 671 Pfam Wall-associated receptor kinase galacturonan-binding 30 91 IPR025287 GO:0030247(InterPro)
Sed06g1431 671 FunFam Wall-associated receptor kinase-like 20 428 636 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1431 Sed-Chr6:39091477 Sed12g2091 Sed-Chr12:31645635 4.40E-128 dispersed
Sed03g0651 Sed-Chr3:3949703 Sed06g1431 Sed-Chr6:39091477 4.40E-128 transposed
Sed06g0838 Sed-Chr6:9127490 Sed06g1431 Sed-Chr6:39091477 1.90E-194 wgd
Sed06g1431 Sed-Chr6:39091477 Sed08g2196 Sed-Chr8:35825832 4.10E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79366 PF00069 Pkinase 1.40E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1431 - - - 0.0