Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1441 ATGCCTGTAGAGAAACATGGTGAAAGGCATAAGATGATTAGTACAAATTCAGAAGAAGAAGAAGAGAATTCACCTCCAAAACTAGCAGCAGCAACAGCAGCTTCGTCGAGCTCATCGGCAGCGACACCATGGCTTAAGCTTAAGGATCCAAGGATCGTGCGTGTGTCGCGAGCTTTTGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGGGGGCTGCGCGACCGGCGTGTAAGGCTTTCGGTTTCGACCGCAATTCAACTCTATGATCTTCAAGATCGCCTTGGTCTTAACCAACCGAGCAAGGTCGTGGACTGGTTGCTCAATGCCGCCAAGGATGAAATTGACGAACTCCCTCCATTGCCAATCCCATCCGAAAGCCTTGGCCTTAACTACCAATCCATGCTACTAGCTCACACCCAAGCACACCCGCTTAGGTCGGAGTTCAAAATCAACTGCGACAGCGGCATCGGCAAGGAAGTCGAGGACGCCGCCGTGGAACAAAAGCAACCGAAATCGAATTCTAATCCCTCACACCCTTCTTCCTTCTCAGCCCTTTTAAACAATGTGAGTGCTCTTCCATTTGGTTACCATCATTGGGAGCCCTCATCAACAACAAATCTTCCATTCTTTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTGAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCAACTGGCTCTCAGTTCATGGAGTTCAATCACTTGCATCAAAATTTCTTGACTAATTCAAATTCTCTTGCACATCCTTTGCACTCAATAAACCAATCTGCTCATGTTAGGCCTTTCCATTTCAGTATGGCTCCCAAATTTGTTACTCAAGACAAGAATGACAATGGAGATCATACACCAAATAAGGATGATCACTTTTGTTCTGAATGA 915 45.79 MPVEKHGERHKMISTNSEEEEENSPPKLAAATAASSSSSAATPWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSESLGLNYQSMLLAHTQAHPLRSEFKINCDSGIGKEVEDAAVEQKQPKSNSNPSHPSSFSALLNNVSALPFGYHHWEPSSTTNLPFFTSQAEDLHNFNNVNLSLPSPLSLSTGSQFMEFNHLHQNFLTNSNSLAHPLHSINQSAHVRPFHFSMAPKFVTQDKNDNGDHTPNKDDHFCSE 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39246876 39248766 - Sed0014252.1 Sed06g1441 717984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1441 304 Pfam TCP family transcription factor 61 176 IPR017887 -
Sed06g1441 304 MobiDBLite consensus disorder prediction 1 42 - -
Sed06g1441 304 MobiDBLite consensus disorder prediction 286 304 - -
Sed06g1441 304 ProSiteProfiles TCP domain profile. 61 119 IPR017887 -
Sed06g1441 304 MobiDBLite consensus disorder prediction 283 304 - -
Sed06g1441 304 MobiDBLite consensus disorder prediction 1 25 - -
Sed06g1441 304 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 266 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2252 Sed-Chr1:17035454 Sed06g1441 Sed-Chr6:39246876 4.50E-23 dispersed
Sed01g2290 Sed-Chr1:17339961 Sed06g1441 Sed-Chr6:39246876 8.20E-25 dispersed
Sed06g0854 Sed-Chr6:9558007 Sed06g1441 Sed-Chr6:39246876 7.50E-104 dispersed
Sed06g1441 Sed-Chr6:39246876 Sed08g0281 Sed-Chr8:1662057 3.50E-32 dispersed
Sed06g0853 Sed-Chr6:9558007 Sed06g1441 Sed-Chr6:39246876 8.10E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38886 PF03634 TCP 6.10E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1441 - - - 0.0