Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1472 ATGGGTTCCTTTTCAGTCATCAAATGGCTCTCTTCTTCCACACCCACCACCCTCTTTCTGCTCTTCTTCCTTTTCTTCTTCCACGCCGATGCTATTTCGGCCGATTCCGACAAATCGGCGCTTCTTCACTTCAGAAATGCTGTTTCCGACCCGTCGGGATTGCTTTCCTCCTGGAATCCCACTGGGTCCCATTACTGCTCCTGGTTCGGCGTTTCCTGCGACTCCAATTCGCGCGTTGTGTCCCTCAACATTTCTGGGAACGGCGGTTCAGGTAATTCCAATGCCTTTTTCTGCTCTGATTCTTCTGTTTTTCCGCTTTACGGTCTTGGAATCAGGAGGGGTTGTGTGGGTTTTAGAGGCTCGCTCATTGGGAAGATTCCCCCCGTCGTTGGGAACCTTACTCAGCTGAAGACTCTGTCGCTTCCGTTTAATGGTTTTGTGGGTCAAATTCCTGGGGTAATCTTCGGCTTGGAGAGCCTTGAGGTTCTTGATCTGGAAGGAAACTCTGTAACTGGGGTGCTTCCTAATCGTTTCCAGAGGCTGCCCAACTTGCGGGTTCTCAATCTTGGATTCAATAGGCTTACGGGTGAGATTCCCGGCTTGCTTTCGGATTGTTCGAGTTTGGAGATCTTGAATTTAGCTGGGAATCAGTTGAATGGGACGATTCCGCACTTCGTTGGTCGGTTGAGAGGGGTCTACTTGTCTTTCAATCTTTTTACAGGATCCATTCCGAGTGAGCTTGGGGATAGCTGTGGGAAGCTTCAGCATCTTGACCTCTCCGGTAATTATTTGGTCGGTGGGATTCCTAGCAATTTGGGGAATTGTAGTCAGTTGCAGACACTGTTGCTGTATTCTAATATGCTGGAGGAGGCCATTCCTGCTGAGATTGGTAAGTTGCAGAAGGTACAAGTGCTTGATCTTTCGAGAAATAGCCTCAGTGGTCCTATACCCTCCGAGCTGGGAAACTGCTTGCAGTTGTCCATCCTCGTGCTCTCGAATCTCTTCAATCCAATCTCCAAGATCAATTACACATATGAAGAATCTCTGAATGGGGACCTTAGTGATGATAGTTTTAACTATTTTGCGGGCGGTATACCTGAGTCAATAACTACCCTTCCAAAGCTGAGGATTTTGTGGGCCCCTAGTGCTAACCTCAATGGAAGATTCCCTTCCCAATGGGGCAAGTGTGAAAGCTTAGAGATGATCAACTTAGCTGGTAATTACCTTTATGGGGAGCTTCCTAGTGGATTTAGCGTCTGCAAGAAACTCAAAGTCCTTGATTTAAGCTCAAACCGGCTTTCTGGAGAACTTGATAAAAACCTTCCAGTTCCTTATATGACTCTGCTTGATCTTAGTGGTAACAACTTTGGTGGCCACATTCCTACGTTCTGTGGCAATGATTGCTCACCTCCGATGTTCAGTTCAATGGATCTCGACGATGCTTCGTCTCGGTACCTTGCATTTTTTATCACTAGTATTCGAGGTGCAACCCCTTTTGAATTTCTTGGAGATGGTGATTTGATTGTACATAACTTTGGGGAGAATAGCTTTACAGGAAATCTTCTGTCTTTTCCGTTTCCACTCGTAAGACTGGGAAATAAAACTGTTTATGCTTATCTTGTGGGTGGTAATAGGCTCACTGGACCATTCCCTGATAGTATATTTGAGAGATGCGAAGATTTGGGGGGGCTGATCTTTAATATTAGCAGAAATAAAATATCTGGTCCGTTTTCTTTGGCAATTGGTAAAAAGTGTGGTTCTCTCAAGTTCTTGGATGCATCTGGTAATCAAATGACTGGGAAGTTACCTCTTAGCTTTGGGGAGCTATTAGCTCTCAATCACCTGAACCTAAGTTGGAACAAGTTTCAGTATCAAATTCCAATTTCTTTAGGGCAGATGGCTGATTTAAGGTACCTTTGTTTGGCTGGCAATAACTTCAATGGTTCTATACCTTCTACCTTGGGAAAGTTGCAGTCTTTGGAGTTACTGGATCTTTCGTATAACGATCTTTCTGGTGGAATTCCTACAGATCTTGTCAAATTGAGAGGCCTAAAAGTTCTGCTGCTCAACAACAATTCACTCTCTGGACAGGTTCCCTCTGGTTTGGCAAATGTTACTACACTCTCTGCATTTAATGTGTCATTCAACAACTTGTCTGGTTCCCTGCCATCCAATAACATGATTAAATGTAGTGGTGCAATTGGAAATCCTTACCTAAGCCCGTGCCGTATGTATTCTCTGGCAGTACCATCATCTGAAATGCAAGGTTCGGTTAGCGACCCAAGTAGTCTTGCAGCTTCACCGTCTGGTGTTGCACCCCAAACGAGTGGAGGTGGCAGCTTCAATTCAATTGAGATAGCATCCATTACATCTGCCTCCGCCATTGTCTCTGTTCTCATTGCTTTAATTATCCTGTTTCTATATACCCGAAAGTGGAACTCGAGGTCTAAAGTTCTTGGATCAATGAGGAAGGAAGTGACGGTTTTTACTGACATTGGGGTTTCCTTGACGTTTGAGAATGTCGTTCGTGCCACAAGCAATTTCAATGCAAGCAATTGCATTGGTAGTGGAGGGTTTGGGGCAACTTACAAGGCGGAGTTAGGGTCAGGAGTGTTGGTCGCAATAAAACGACTCTCTGTAGGTCGATTTCAAGGTGTCCAACAGTTCGATGCAGAAATTAAAACTCTTGGAAGGCTTCGTCACCCCAACCTTGTCACTTTAATTGGTTACCATGCCAGTGAAATGGAGATGTTCCTGATATATAATTATTTGCCAGGAGGTAATTTGGAAAAATTCATCCAGGAGAGGTCTACAAGAGAAGTTGATTGGAGAATTCTTCACAAGATTGCGCTAGACATAGCCCGTGCACTTGCATATCTTCACGATCAGTGTGTACCACGAGTCCTCCACCGTGATGTCAAACCGAGCAATATACTATTAGATGATGATTTCAGTGCTTATCTCTCTGATTTTGGATTGGCCAGGCTTCTTGGGACTTCTGAAACCCATGCTACAACAGGTGTGGCTGGAACTTTCGGCTATGTTGCTCCAGAATATGCTATGACTTGCCGTGTCTCTGATAAAGCAGACGTGTACAGCTATGGCGTAGTGCTTCTCGAGCTACTCTCAGACAAAAAAGCACTAGATCCCTCGTTTTCCTCGTATGGTAATGGTTTTAACATAGTAGCTTGGGCATGTATGCTGCTTCGGCAGGGGCGCGCCAAGGAATTCTTCACATCAGGGTTATGGGAGGTAGGCCCCCATGATGATCTGGTTGAAGTATTGCACTTAGCAGTTGTGTGTACAGTTGACTCTCTCTCGACAAGGCCGACAATGAAGCAGGTCGTGCGACGGCTTAAGCAGCTTCAACCGCCATCATGTTAG 3384 45.27 MGSFSVIKWLSSSTPTTLFLLFFLFFFHADAISADSDKSALLHFRNAVSDPSGLLSSWNPTGSHYCSWFGVSCDSNSRVVSLNISGNGGSGNSNAFFCSDSSVFPLYGLGIRRGCVGFRGSLIGKIPPVVGNLTQLKTLSLPFNGFVGQIPGVIFGLESLEVLDLEGNSVTGVLPNRFQRLPNLRVLNLGFNRLTGEIPGLLSDCSSLEILNLAGNQLNGTIPHFVGRLRGVYLSFNLFTGSIPSELGDSCGKLQHLDLSGNYLVGGIPSNLGNCSQLQTLLLYSNMLEEAIPAEIGKLQKVQVLDLSRNSLSGPIPSELGNCLQLSILVLSNLFNPISKINYTYEESLNGDLSDDSFNYFAGGIPESITTLPKLRILWAPSANLNGRFPSQWGKCESLEMINLAGNYLYGELPSGFSVCKKLKVLDLSSNRLSGELDKNLPVPYMTLLDLSGNNFGGHIPTFCGNDCSPPMFSSMDLDDASSRYLAFFITSIRGATPFEFLGDGDLIVHNFGENSFTGNLLSFPFPLVRLGNKTVYAYLVGGNRLTGPFPDSIFERCEDLGGLIFNISRNKISGPFSLAIGKKCGSLKFLDASGNQMTGKLPLSFGELLALNHLNLSWNKFQYQIPISLGQMADLRYLCLAGNNFNGSIPSTLGKLQSLELLDLSYNDLSGGIPTDLVKLRGLKVLLLNNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNMIKCSGAIGNPYLSPCRMYSLAVPSSEMQGSVSDPSSLAASPSGVAPQTSGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVLGSMRKEVTVFTDIGVSLTFENVVRATSNFNASNCIGSGGFGATYKAELGSGVLVAIKRLSVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASEMEMFLIYNYLPGGNLEKFIQERSTREVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFSAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTSGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39478834 39482715 + Sed0004385.1 Sed06g1472 718015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1472 1127 ProSiteProfiles Leucine-rich repeat profile. 183 205 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Sed06g1472 1127 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 354 437 - -
Sed06g1472 1127 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 812 923 - -
Sed06g1472 1127 Pfam Leucine Rich Repeat 659 681 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 Pfam Leucine Rich Repeat 302 323 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 Pfam Leucine Rich Repeat 587 609 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 Pfam Leucine Rich Repeat 253 275 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 Pfam Leucine Rich Repeat 207 229 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 Pfam Leucine Rich Repeat 422 441 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 Pfam Leucine Rich Repeat 636 657 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 Pfam Leucine Rich Repeat 447 466 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 Pfam Leucine Rich Repeat 684 704 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 SUPERFAMILY L domain-like 485 725 - -
Sed06g1472 1127 FunFam Nuclear pore complex protein NUP107 34 200 - -
Sed06g1472 1127 Pfam Protein kinase domain 851 1049 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1472 1127 SUPERFAMILY Protein kinase-like (PK-like) 833 1119 IPR011009 -
Sed06g1472 1127 Gene3D Phosphorylase Kinase; domain 1 810 923 - -
Sed06g1472 1127 PRINTS Leucine-rich repeat signature 657 670 - -
Sed06g1472 1127 PRINTS Leucine-rich repeat signature 423 436 - -
Sed06g1472 1127 Gene3D Ribonuclease Inhibitor 630 743 IPR032675 -
Sed06g1472 1127 SMART serkin_6 848 1126 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1472 1127 ProSitePatterns Serine/Threonine protein kinases active-site signature. 968 980 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1472 1127 SUPERFAMILY RNI-like 123 462 - -
Sed06g1472 1127 Gene3D Ribonuclease Inhibitor 557 629 IPR032675 -
Sed06g1472 1127 ProSitePatterns Protein kinases ATP-binding region signature. 854 876 IPR017441 GO:0005524(InterPro)
Sed06g1472 1127 ProSiteProfiles Protein kinase domain profile. 848 1122 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1472 1127 Pfam Leucine rich repeat 135 194 IPR001611 GO:0005515(InterPro)
Sed06g1472 1127 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 478 732 - -
Sed06g1472 1127 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 248 339 - -
Sed06g1472 1127 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 924 1126 - -
Sed06g1472 1127 Gene3D Ribonuclease Inhibitor 33 226 IPR032675 -
Sed06g1472 1127 Gene3D Transferase(Phosphotransferase) domain 1 924 1124 - -
Sed06g1472 1127 Gene3D Ribonuclease Inhibitor 352 523 IPR032675 -
Sed06g1472 1127 Gene3D Ribonuclease Inhibitor 228 351 IPR032675 -
Sed06g1472 1127 CDD STKc_IRAK 854 1122 - -
Sed06g1472 1127 SMART LRR_typ_2 299 323 IPR003591 -
Sed06g1472 1127 SMART LRR_typ_2 609 633 IPR003591 -
Sed06g1472 1127 SMART LRR_typ_2 657 681 IPR003591 -
Sed06g1472 1127 SMART LRR_typ_2 157 180 IPR003591 -
Sed06g1472 1127 SMART LRR_typ_2 206 229 IPR003591 -
Sed06g1472 1127 SMART LRR_typ_2 251 275 IPR003591 -
Sed06g1472 1127 SMART LRR_typ_2 181 205 IPR003591 -
Sed06g1472 1127 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 672 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1472 Sed-Chr6:39478834 Sed07g1049 Sed-Chr7:7561561 4.00E-65 dispersed
Sed03g0974 Sed-Chr3:6030370 Sed06g1472 Sed-Chr6:39478834 2.20E-06 transposed
Sed06g1472 Sed-Chr6:39478834 Sed07g1970 Sed-Chr7:34482553 6.30E-63 wgd
Sed06g1472 Sed-Chr6:39478834 Sed08g2221 Sed-Chr8:35932405 1.20E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79370 PF00069 Pkinase 7.90E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1472 - - - 0.0