Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1474 ATGGCTAATTCATTCAAGATTCTGCTTATTTCCTTAGCTTTTTTTGCCATTTTCGCCCAAGCCATTGGCTCTAGGCTAATTCCTATTTCAAATCAAGGAGTTGACGCTACATGGTACGATGCTCGTGCCACATTCTATGGCGATATGAGAGGTGCCGAAACAATGCAGGGAGCGTGTGGCTACGGGAACCTGTTCGAGCAAGGGTATGGGCTAGCGACGGCAGCGCTTAGCACAGCATTGTTCAAGAATGGCGGTGTATGCGGGGCATGCTTCGAGATAATGTGCATGAACAATAGAGAACACCAGTGGTGCATACCACAAGCAGGCACAATCACAATAACAGCAACAAACTTCTGTCCACCAAACTACACAAAAACTCAAGACATTTGGTGCAACCCACCGCAACGCCACTTCGACCTGTCCCTTTACATGTTCTCCAAAATAGCCCCTTACAGGGCCGGCGTCATCCCAGTCCGCTACCGCAGGACACCCTGCCGCAAACTCGGCAGCCTCAGGTTTCAGCTCAAAGGGAATCCCTACTGGCTCATGGTTTTGTTGTTCAATGTTGGTGGTGCTGGTGATGTTGTTGATGTTAAGATTAGAGGCTCTACTGGATCTGTCTGGCTTCAAATGAAAAGGAATTGGGGCCAGAATTGGGTAGTCGGTACCGTACTCGTCGGACAGAGCTTGTCTTTCCAAGTTACTACTAGCGATCGGAAGACGATTGAGTTTGATAATGTCGCTCCGAGCTCTTGGCAATTTGGGCAGACATTTGATGGGAGAAATAATTTTTAG 795 48.18 MANSFKILLISLAFFAIFAQAIGSRLIPISNQGVDATWYDARATFYGDMRGAETMQGACGYGNLFEQGYGLATAALSTALFKNGGVCGACFEIMCMNNREHQWCIPQAGTITITATNFCPPNYTKTQDIWCNPPQRHFDLSLYMFSKIAPYRAGVIPVRYRRTPCRKLGSLRFQLKGNPYWLMVLLFNVGGAGDVVDVKIRGSTGSVWLQMKRNWGQNWVVGTVLVGQSLSFQVTTSDRKTIEFDNVAPSSWQFGQTFDGRNNF 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39493423 39494971 - Sed0000079.1 Sed06g1474 718017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1474 264 PRINTS Expansin signature 97 108 IPR002963 GO:0009664(InterPro)
Sed06g1474 264 PRINTS Expansin signature 217 238 IPR002963 GO:0009664(InterPro)
Sed06g1474 264 PRINTS Expansin signature 111 121 IPR002963 GO:0009664(InterPro)
Sed06g1474 264 PRINTS Expansin signature 145 158 IPR002963 GO:0009664(InterPro)
Sed06g1474 264 PRINTS Expansin signature 128 145 IPR002963 GO:0009664(InterPro)
Sed06g1474 264 PRINTS Expansin signature 246 262 IPR002963 GO:0009664(InterPro)
Sed06g1474 264 PRINTS Expansin signature 169 181 IPR002963 GO:0009664(InterPro)
Sed06g1474 264 PRINTS Expansin signature 181 202 IPR002963 GO:0009664(InterPro)
Sed06g1474 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Sed06g1474 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 170 IPR007112 -
Sed06g1474 264 SUPERFAMILY Barwin-like endoglucanases 12 188 IPR036908 -
Sed06g1474 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Sed06g1474 264 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576(InterPro)
Sed06g1474 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Sed06g1474 264 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576(InterPro)
Sed06g1474 264 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576(InterPro)
Sed06g1474 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Sed06g1474 264 CDD DPBB_EXPA_N 38 165 - -
Sed06g1474 264 SUPERFAMILY PHL pollen allergen 169 260 IPR036749 -
Sed06g1474 264 Gene3D - 27 166 IPR036908 -
Sed06g1474 264 SMART dpbb_1 73 160 IPR007112 -
Sed06g1474 264 Pfam Lytic transglycolase 73 160 IPR009009 -
Sed06g1474 264 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Sed06g1474 264 PANTHER EXPANSIN-A15 14 262 IPR002963 GO:0009664(InterPro)
Sed06g1474 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 260 IPR007117 -
Sed06g1474 264 Gene3D - 170 264 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0306 Sed-Chr6:2703368 Sed06g1474 Sed-Chr6:39493423 4.80E-123 dispersed
Sed06g1474 Sed-Chr6:39493423 Sed07g2495 Sed-Chr7:40621356 2.80E-78 dispersed
Sed06g1474 Sed-Chr6:39493423 Sed14g0493 Sed-Chr14:4867194 2.10E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1474 - - - 0.0