Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1479 ATGACGGAAAACCAGAAGCATAGGCTGGAATTCAGTTCAGACTCATCTCCGGAAAGGCCGTTCAAGATTGGAAAGACGGCGGACGAAGCAGAACCCATGAACCCTAATCCTGCTGGAATCCAACGCTACCTTGTCGCAGTCGAATATGTTGGAACTCGCTTTTTCGGATCTCAGAAGCAACCCAATTGCCGTACGGTGGTTGGCGCGCTTGAGGAAGCGTTTCAGAAATTCATCGGCCAATCAGTTCCAGTGTTTTGTTCTAGCAGAACTGATGCTGGAGTTCATGCCTTATCAAATGCTTTTCATGTCGATGTTGAGCGCATAAGCAAAAGAAAGCCCGGAGAAGTGTTACCTCCTCATGAACCAGGAGTCGTTCGTAGGGCTGTGAATCATTTCTTACAGAAACAAGGTGATGTTATGGTAGTCGATGTTCGAAGTGTTCCCAATGATTTTCATGCTAGATATAAAGCTCAAGAGCGTACCTACTTTTATCGGTTAGTTTCTGGGGAAGACGTATTGTCAAGCTTTGTGAAGGATCGGGCATGGCACGTGCCAGAGACATTGAATATTGGGGCCATGAAGGAGGCGTGCAAAGTGCTTGTTGGGCATCATGACTTTAGCTCCTTCAGGGCAGCCGGTTGTCAGGCAAACTCGCCAATCCGAACTCTGGATGAACTGGACATTTGCGAAGTAGCTTCAACGCCTTATTTTCCAACATTAACCGAGCGAAACCAATGGCAAGGTAAAGACGAGACTTGCGAGGTTGGATTTGGGATGAGGAGAAGGCATCAATGTTTTGTGGTGACCGCACGAGCACGCTCTTTTCTGTATCATCAGACATCTCCGGTGTCTCCATTCCTTTGA 864 47.45 MTENQKHRLEFSSDSSPERPFKIGKTADEAEPMNPNPAGIQRYLVAVEYVGTRFFGSQKQPNCRTVVGALEEAFQKFIGQSVPVFCSSRTDAGVHALSNAFHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKQGDVMVVDVRSVPNDFHARYKAQERTYFYRLVSGEDVLSSFVKDRAWHVPETLNIGAMKEACKVLVGHHDFSSFRAAGCQANSPIRTLDELDICEVASTPYFPTLTERNQWQGKDETCEVGFGMRRRHQCFVVTARARSFLYHQTSPVSPFL 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39509595 39514238 + Sed0027668.4 Sed06g1479 718022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1479 287 PANTHER PSEUDOURIDYLATE SYNTHASE 25 279 IPR001406 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(PANTHER)|GO:0009982(InterPro)|GO:0031119(PANTHER)
Sed06g1479 287 MobiDBLite consensus disorder prediction 1 26 - -
Sed06g1479 287 MobiDBLite consensus disorder prediction 1 36 - -
Sed06g1479 287 SUPERFAMILY Pseudouridine synthase 40 279 IPR020103 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Sed06g1479 287 CDD PseudoU_synth_EcTruA 47 279 IPR001406 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Sed06g1479 287 Gene3D - 158 280 IPR020095 GO:0003723(InterPro)|GO:0009982(InterPro)
Sed06g1479 287 Gene3D - 38 157 IPR020094 GO:0003723(InterPro)|GO:0009982(InterPro)
Sed06g1479 287 FunFam tRNA pseudouridine synthase A 39 157 - -
Sed06g1479 287 PIRSF PSU-A 40 280 IPR001406 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Sed06g1479 287 Pfam tRNA pseudouridine synthase 196 279 IPR020097 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Sed06g1479 287 Pfam tRNA pseudouridine synthase 46 155 IPR020097 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1479 K06173 - - csv:101221274 481.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1477 Sed-Chr6:39509595 Sed06g1479 Sed-Chr6:39509595 1.00E-163 dispersed
Sed06g1478 Sed-Chr6:39509595 Sed06g1479 Sed-Chr6:39509595 1.80E-168 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g264 Blo01g00018 . . Bda08g00342 . . . Bma05g00982 . . . . . . . . . . . . . . . . Cla06g00388 Cam06g0410 Cec06g0419 Cco06g0418 Clacu06g0398 Cmu06g0397 Cre06g1174 Cone14ag0674 Cone15ag0685 . . . . . . . . . . Bpe05g00791 . . . Sed06g1479 . . . . . . Cpe12g00351 . Bhi12g02002 Tan06g2820 Cmetu10g0038 . Hepe03g0005 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008478 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 34