Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1480 ATGAAAATGGCACTACTACCTCAAGTAGTTGTTGTTGCATTGACGTTGCTACTTCTGGGCGTAGGATGCAATGCCCAACTTTCTTCTACATTTTACGACCAAACTTGTCCGAATGCACTCACAACTATCCGAACTGTTATTAGACAGGCGGTTTCTCAAGAACGTCGAATGGCTGCATCTCTCATCCGTCTCCATTTCCACGACTGCTTCGTTCAGGGCTGCGACGCATCAATACTGCTCGACGATACACCCTCCATGATTGGTGAACAAAATGCTGCGCCGAACCGAAAATCCGCTCGAGGCTATGGGGTCATTCACAAGGCTAAGACCGAAGTTGAGAAGATATGTCCTGGGGTCGTATCCTGTGCAGATGTTCTCGCTGTTGCTGCAAGAGATGCTTCCTTTGCAGTTGGCGGTCCATCGTGGACGGTAAGGCTGGGAAGAAGAGACTCTACCGATGCAAGCAAAGCTCTGGCAGAGAGCGAACTTCCACATTTTCAAGCCGGCCTTGATAAACTTATTTCTATTTTTTCAAATAAAGGCCTTAGTACAAGAGATATGGTTGCACTTTCAGGGTCTCATACGATAGGACAAGCCCAATGCTTTCTTTTCCGCCATAGGATATACAACCAAAGTAATATTGATGCCGGATTCGCAAGCACTCGCCGCAGAAAATGTCCGGCATCGGGGGAGAATGAGAATTTGGCACCACTTGATTTGGTAACACCCAATTCCTTCGACAATAACTATTTCAAAAATCTTGTTCAAAGGAAGGGTTTGTTAGAAACAGATCAAGTTCTGTTCAATGGAGGATCCACAGATAATATTGTGATGGAGTATAGTAGAGATCCAACCGCATTTAAATCTGACTTTGCAACGGCAATGCTTAAGATGGGAGACATTGAACCCCTCACTGGTTTGGAAGGCCAAATCAGAAATATATGCAGTGCTCTCAACTAA 960 45.21 MKMALLPQVVVVALTLLLLGVGCNAQLSSTFYDQTCPNALTTIRTVIRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRKSARGYGVIHKAKTEVEKICPGVVSCADVLAVAARDASFAVGGPSWTVRLGRRDSTDASKALAESELPHFQAGLDKLISIFSNKGLSTRDMVALSGSHTIGQAQCFLFRHRIYNQSNIDAGFASTRRRKCPASGENENLAPLDLVTPNSFDNNYFKNLVQRKGLLETDQVLFNGGSTDNIVMEYSRDPTAFKSDFATAMLKMGDIEPLTGLEGQIRNICSALN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39529727 39530901 - Sed0003685.1 Sed06g1480 718023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1480 319 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Sed06g1480 319 Gene3D - 30 316 - -
Sed06g1480 319 ProSiteProfiles Plant heme peroxidase family profile. 26 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 FunFam Peroxidase 164 298 - -
Sed06g1480 319 CDD secretory_peroxidase 26 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed06g1480 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Sed06g1480 319 Pfam Peroxidase 43 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
Sed06g1480 319 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 Gene3D Peroxidase, domain 2 164 298 - -
Sed06g1480 319 SUPERFAMILY Heme-dependent peroxidases 26 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed06g1480 319 FunFam Peroxidase 30 179 - -
Sed06g1480 319 PANTHER PEROXIDASE 72-RELATED 15 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3805 Sed-Chr5:45703213 Sed06g1480 Sed-Chr6:39529727 5.10E-98 dispersed
Sed05g3806 Sed-Chr5:45708736 Sed06g1480 Sed-Chr6:39529727 7.20E-98 dispersed
Sed06g1480 Sed-Chr6:39529727 Sed13g1016 Sed-Chr13:8275705 1.20E-78 dispersed
Sed06g1480 Sed-Chr6:39529727 Sed01g0806 Sed-Chr1:5960997 3.80E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1480 K00430 - csv:116403994 553.903