Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1497 ATGGGTGAAGACGAGGAAAAGCTGTCACCGCCGCCGTCAAAATCTGAAGCTGTTCCGTTGCGGCCCACTATTAATGTGCCTCCACGAGCCTGTATGGAGTCGGTGTTCCGAGGTGGGCCGGGTTTGGGATTCGGGTTTAGCCCGGGGCCCATGACCCTGGTCTCTAGCTTCTTCTCCGATTCCGACGACGGCAAGTCTCTGTCTCAGCTCCTCCTCGCCGGAGATAAGGCGTCGCCGGTGGCGTCTCAGCTCAACAGCCCCGCCAGTCTCCTCGATTCTCCCCGCATTTTTTCGCCTGCTCCGGGACCTTTTGGAATGACACATCAGCAGGTTTTGGATCAGGTTACTATGCAGGCTGCACAAGCCTTTTCTCATAAGCAAATACAAGCCGAATCTTTTTCTTCATCAGTAGCACCCTATGTAACCTCCTCAGAGCTTTTGACGACCTCTCCGGTCGAGAAGACGAAAGATCAGCCAATGCCACCTCATTTGCTGAAGGAATCATGGGATATTTCTCAATCAGATCAGAGGTTGCAATCTTCTTCGTGTAATGTTGATAAGCCTGCTGATGATGGCTATAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGTTACTATAAGTGCACACATCCGAATTGTCATGTCAAAAAAAAGGTCGAACGATCTCTGGAAGGCCATGTCACTGAAATTATCTACAAGGGCGAGCACAATCACGAACGGCCTCAACCGAACAAGCGGTCGAAGGATGCTGGATATTCTAATGGCTATTCAAATATTAGTGGAAATCCTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAGTTGAATGAGCAGGCAGCTGTGTCTTCCATTGCAAAGAAGGATCAAGAACGAAGTCATATTACGCAGGAGTCGGATACTAGTGATGGCGAGGGAGGGAGTAAGATAGAAACTGGAGTGAATCGAAAAGATGAAGACGAACCTAATGCCAAGAGACGGAATACGGAGGGTAGAGTTTCTGAGCCAGCATCTTCTCATAGGACGCTTACAGAATCCAGAATCATTGTGCAGACAACAAGTGAAGTCGATCTATTGGACGATGGCTACAGGTGGCGAAAGTATGGGCAGAAAACGGTTAAAGGAAACCCTTACCCCCGGAGCTACTATAAATGCACGACACCGGGATGCAATGTTCGTAAACATGTTGAGAGAGCTTCAGCGGACCAAAAAACCGTTATAACGACATACGAGGGTAAACACAATCATGATGTTCCAGCTGGTAAAATCAGCAGCCACAGTACCATTCCGCAGCTAAAATCCCAAAATTCGAGTAACAACGCTAATCCTGGGAACTCTTGCAACCGTTAA 1374 47.67 MGEDEEKLSPPPSKSEAVPLRPTINVPPRACMESVFRGGPGLGFGFSPGPMTLVSSFFSDSDDGKSLSQLLLAGDKASPVASQLNSPASLLDSPRIFSPAPGPFGMTHQQVLDQVTMQAAQAFSHKQIQAESFSSSVAPYVTSSELLTTSPVEKTKDQPMPPHLLKESWDISQSDQRLQSSSCNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCHVKKKVERSLEGHVTEIIYKGEHNHERPQPNKRSKDAGYSNGYSNISGNPELSSQVQSGYLNKLNEQAAVSSIAKKDQERSHITQESDTSDGEGGSKIETGVNRKDEDEPNAKRRNTEGRVSEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKTVKGNPYPRSYYKCTTPGCNVRKHVERASADQKTVITTYEGKHNHDVPAGKISSHSTIPQLKSQNSSNNANPGNSCNR 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39672743 39676297 + Sed0018215.1 Sed06g1497 718040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1497 457 MobiDBLite consensus disorder prediction 293 307 - -
Sed06g1497 457 MobiDBLite consensus disorder prediction 291 353 - -
Sed06g1497 457 MobiDBLite consensus disorder prediction 318 342 - -
Sed06g1497 457 FunFam WRKY transcription factor 176 249 - -
Sed06g1497 457 MobiDBLite consensus disorder prediction 239 271 - -
Sed06g1497 457 ProSiteProfiles WRKY domain profile. 362 427 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1497 457 FunFam WRKY transcription factor 33 354 420 - -
Sed06g1497 457 MobiDBLite consensus disorder prediction 254 271 - -
Sed06g1497 457 SMART WRKY_cls 367 426 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1497 457 SMART WRKY_cls 189 247 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1497 457 Pfam WRKY DNA -binding domain 190 246 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1497 457 Pfam WRKY DNA -binding domain 368 425 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1497 457 Gene3D WRKY domain 174 249 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1497 457 Gene3D WRKY domain 352 428 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1497 457 ProSiteProfiles WRKY domain profile. 190 248 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1497 457 MobiDBLite consensus disorder prediction 1 22 - -
Sed06g1497 457 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 118 441 IPR044810 GO:0003700(InterPro)
Sed06g1497 457 MobiDBLite consensus disorder prediction 420 457 - -
Sed06g1497 457 SUPERFAMILY WRKY DNA-binding domain 188 248 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1497 457 MobiDBLite consensus disorder prediction 429 457 - -
Sed06g1497 457 SUPERFAMILY WRKY DNA-binding domain 359 427 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g1497 457 MobiDBLite consensus disorder prediction 239 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1312 Sed-Chr4:27426400 Sed06g1497 Sed-Chr6:39672743 2.90E-54 dispersed
Sed06g1497 Sed-Chr6:39672743 Sed11g2033 Sed-Chr11:34377014 1.30E-102 dispersed
Sed11g2032 Sed-Chr11:34377014 Sed06g1497 Sed-Chr6:39672743 8.00E-103 wgd
Sed03g0237 Sed-Chr3:1472733 Sed06g1497 Sed-Chr6:39672743 4.70E-103 wgd
Sed06g1497 Sed-Chr6:39672743 Sed07g1962 Sed-Chr7:34269019 4.40E-188 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38887 PF03106 WRKY 2.70E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1497 - - - 0.0