Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1505 ATGAGCTCCGATCGGTCCGGAACTGCCGCCGGCGGTTCTCCGGCGTCGGGGACGAGCAAGGAGAAGCAAAAGGAGAAATCGCGAGTGAGTCGAACGTCGCTGATTTTGTGGCACGCTCACCAGAACGACGCCACTGCTGTTCGCAAGCTTTTGGAGGAGGATCAGTCGCTTGTTCATGCCAGAGATTACGATAGCCGCACTCCTCTCCATGTTGCGTCGCTTCACGGATGGATCAACGTCGCTAAGTGCTTGATCGAACACGGCGCTGATGTTAATGCGCAAGATCGCTGGAAGAACACTCCTCTAGCTGACGCGGAAGGAGCCAAAAAGCATGGCATGATTGAGTTGTTAAAATCGTATGGCGGCCTTTCCTATGGCCAAAATGGAAGCCATTTTGAACAGAAGCCTGTTCTTCCTCCCCTGCCAAATAAATGTGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATAATTGGCAAGGGGTCATTTGGGGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAACGTATTCTTCCATCACTTTCTGATGATAGACTTGTGATTCAGGACTTCCGACATGAGGTTAATCTGTTGGTGAAGCTACGTCACCCGAATATAGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAACCACTTATGTTAATCATTGAATACTTGAGAGGGGGTGATCTTCACCAGTACCTCAAGGATAAAGGTTCACTCAGTCCTGCAACGGCCATCAATTTTGCACTGGACATTGCCAGGGGAATGGCTTATCTCCACAATGAGCCAAATGTTATAGTTCATCGTGATCTAAAACCAAGGAACGTTCTCTTAGTTAATTCCGGAGCCGACCATCTGAAAGTTGGCGATTTCGGTCTAAGCAAACTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACTGGCGAGACTGGGAGCTACCGATATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTGGACGTGTTTTCTTTCGCAATGATATTATACGAGATGCTTGAGGGAGATCCTCCACTGGCAAATTATGAGCCCTATGAAGCTGCCAAATACGTGGCTGAAGGTCATAGACCGGTGTTTCGTGCGAAAGGATACCTTCCTGTTCTAAGAGAGTTAACAGAAGAATGTTGGGCAGCTGATATGAACAAGAGACCATCTTTCTTGGAAATTCTCAAAAGACTTGATAAGATCAAGGAAAATTTACCTACCGATCATTCCTGGAATTTGTTTAATGCATAA 1299 45.73 MSSDRSGTAAGGSPASGTSKEKQKEKSRVSRTSLILWHAHQNDATAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWINVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEQKPVLPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLIIEYLRGGDLHQYLKDKGSLSPATAINFALDIARGMAYLHNEPNVIVHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPVFRAKGYLPVLRELTEECWAADMNKRPSFLEILKRLDKIKENLPTDHSWNLFNA 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39732390 39738845 + Sed0015795.1 Sed06g1505 718048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1505 432 SUPERFAMILY Ankyrin repeat 35 121 IPR036770 -
Sed06g1505 432 FunFam serine/threonine-protein kinase STY8 9 130 - -
Sed06g1505 432 FunFam Integrin-linked protein kinase family 235 430 - -
Sed06g1505 432 CDD STKc_MAP3K-like 162 414 - -
Sed06g1505 432 Gene3D - 6 129 IPR036770 -
Sed06g1505 432 Gene3D Phosphorylase Kinase; domain 1 140 235 - -
Sed06g1505 432 SMART serkin_6 156 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1505 432 ProSiteProfiles Ankyrin repeat region circular profile. 64 96 - -
Sed06g1505 432 Pfam Ankyrin repeats (3 copies) 38 119 IPR002110 GO:0005515(InterPro)
Sed06g1505 432 MobiDBLite consensus disorder prediction 1 31 - -
Sed06g1505 432 MobiDBLite consensus disorder prediction 1 18 - -
Sed06g1505 432 PIRSF ILK 1 432 - -
Sed06g1505 432 SUPERFAMILY Protein kinase-like (PK-like) 154 426 IPR011009 -
Sed06g1505 432 ProSiteProfiles Protein kinase domain profile. 156 428 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1505 432 ProSiteProfiles Ankyrin repeat profile. 64 96 IPR002110 GO:0005515(InterPro)
Sed06g1505 432 ProSitePatterns Protein kinases ATP-binding region signature. 162 183 IPR017441 GO:0005524(InterPro)
Sed06g1505 432 SMART ANK_2a 64 93 IPR002110 GO:0005515(InterPro)
Sed06g1505 432 Gene3D Transferase(Phosphotransferase) domain 1 236 428 - -
Sed06g1505 432 Pfam Protein tyrosine and serine/threonine kinase 160 414 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1505 432 PANTHER SERINE-THREONINE PROTEIN KINASE 47 417 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed06g1505 432 FunFam serine/threonine-protein kinase STY46-like 149 235 - -
Sed06g1505 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1505 Sed-Chr6:39732390 Sed08g2714 Sed-Chr8:39061769 3.60E-83 dispersed
Sed06g1505 Sed-Chr6:39732390 Sed07g1958 Sed-Chr7:34163521 3.10E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79371 PF07714 PK_Tyr_Ser-Thr 6.20E-63 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1505 - - - 0.0